DN621601

Overview
NameDN621601
Unique NameDN621601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = -3
Query:  167 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 412
            V++ F A WCGPCR ++P+   +A +Y  K+  +KV+ DE   VA+++ I S+PT    K G++VD VVGA  K+ L + + +H
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKH 106          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12
Identity = 27/69 (39.13%), Postives = 45/69 (65.22%), Query Frame = -3
Query:  206 VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 412
            V++ F A WCGPC+ + P+F  +A       F+KVD+D+A ++++ + I S+PT  F ++GK  DK +G
Sbjct:   20 VVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIG 88          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: GRS11_ORYSJ (Monothiol glutaredoxin-S11 OS=Oryza sativa subsp. japonica GN=GRXS11 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 32/97 (32.99%), Postives = 58/97 (59.79%), Query Frame = -3
Query:  161 ETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 451
            + +L AA    R   ++F A WC   + +  +F +LA  ++  VFL+V+ +E  +++  + + +VP F F+K GK VD + GA+ ++L  K+A+ AG
Sbjct:   10 KAELEAAAGGARAAAVHFWAAWCEASKQMDEVFAHLAVDFSHAVFLRVEAEEQPEISEAYGVTAVPYFVFLKEGKTVDTLEGANPASLANKVAKLAG 106          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TXND8_RAT (Thioredoxin domain-containing protein 8 OS=Rattus norvegicus GN=Txndc8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = -3
Query:  221 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEV 481
            V  I S  EF+  L AA    RLV++ F+A WCGPC+ I+P F  ++ +Y  V+F +VD+D ++++    +I  VPTF   K+ ++V
Sbjct:    2 VQKIKSMREFKELLGAAGN--RLVVVEFSAQWCGPCKMIAPAFQAMSLQYRNVMFAQVDVDSSQELTEHCSIQVVPTFQMFKHSRKV 86          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TR548_MIMIV (Thioredoxin-like protein R548 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R548 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 38/110 (34.55%), Postives = 60/110 (54.55%), Query Frame = -3
Query:  170 REGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEAR--DVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 493
            ++  V  I + ++F T L   ++ L  VI+ F  TWCGPC+ I+P +  +A KY  V F K++ +     ++     I S+PTF F K GK + + V AD   LE+ I +
Sbjct:   27 KKNSVEEIITLNDFSTALGDESKGL--VIIDFFTTWCGPCKRIAPDYIRMAEKYPTVSFYKINAENENLANIVAACEIVSLPTFCFFKAGKYIGRFVNADPVGLEKSIVE 134          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = -3
Query:  185 VILYFTATWCGPCRFISPLFTNLASK-YTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALE 412
            V++ F A WCGPC+ + P    + +K + KVV  KVDID+  D+A  + + +VPT   IKNG  VDK VG  D+  LE
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLE 158          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = -3
Query:  185 VILYFTATWCGPCRFISPLFTNLASK-YTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALE 412
            V++ F A WCGPC+ + P    + +K + KVV  KVDID+  D+A  + + +VPT   IKNG  VDK VG  D+  LE
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLE 158          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = -3
Query:  167 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 412
            V++ F A WCGPCR ++P+   +A +Y+ +V  +KV+ DE   VA+++ I S+PT    K+G+ VD VVGA  K+ L   + +H
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKH 106          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: GRS17_ARATH (Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana GN=GRXS17 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 29/84 (34.52%), Postives = 55/84 (65.48%), Query Frame = -3
Query:  161 VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 412
            V+L+F A+WC   + +  +F++LA+ + +  F +V+ +E  +++  +++ +VP F F K+GK VD + GAD S+L  K+ + AG
Sbjct:   24 VVLHFWASWCDASKQMDQVFSHLATDFPRAHFFRVEAEEHPEISEAYSVAAVPYFVFFKDGKTVDTLEGADPSSLANKVGKVAG 107          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.359e-11
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = -3
Query:  203 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA 412
            V++ F A WCGPCR I+P+   LA +Y  K+   KV+ D++ ++AT + I S+PT    KNG++ + V+GA
Sbjct:   86 VLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGA 156          
The following BLAST results are available for this feature:
BLAST of DN621601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO1_ANASO4.754e-1240.48Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
THIO_MYCGA6.208e-1239.13Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
GRS11_ORYSJ8.108e-1232.99Monothiol glutaredoxin-S11 OS=Oryza sativa subsp. ... [more]
TXND8_RAT1.383e-1139.08Thioredoxin domain-containing protein 8 OS=Rattus ... [more]
TR548_MIMIV1.383e-1134.55Thioredoxin-like protein R548 OS=Acanthamoeba poly... [more]
THIOM_RAT1.383e-1144.87Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE1.383e-1144.87Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIO1_SYNE71.383e-1140.48Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
GRS17_ARATH1.806e-1134.52Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana... [more]
TRXM_ORYSJ2.359e-1142.25Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621601 ID=DN621601; Name=DN621601; organism=Citrus sinensis; type=EST; length=495bp
TTTTTTTTTTTTTTTTTGAAGATAAATTTTAGGAGCAAGTTATTTTTATT
CAAATACTGAAATTTTATCAGACATTATTTGCTTGGCAAACAAATGGGTA
GGAAAGGCTTGCAAGCAGATATTACTCTAAAGTTCTCATTATTCAGGAGT
GGTTTTACTGGCCAGCATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTA
TCAGCCCCGACAACCTTGTCAACTTCCTTACCATTCTTTATGAAGAAAAA
GGTGGGAACAGAACCAATATTCCAGCGTGTAGCTACATCTCTTGCCTCAT
CTATGTCAACTTTCAAGAAAACAACCTTCGTGTATTTTGAGGCTAAATTT
GTAAAAAGAGGAGAAATGAAACGGCAGGGCCCGCACCATGTTGCAGTAAA
GTACAGAATCACCAGGCGCAATGCTCTAGTAGCAGCATTCAACTTAGTTT
CAAATTCACTATCTGAGTGAATACCCATTACTTGCCCTTCCCTTA
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