DN621595

Overview
NameDN621595
Unique NameDN621595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621595 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  111 YPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIK----HGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQFTYTDYV 479
            YP CP P L +G+  HTD   LTIL Q +  GL+I+     G  W+ V+P+ G+LV+ +GD+  I+SN ++ S  HR + N +   R+S A F  P +   + GP         P  +R+  + +Y+
Sbjct:  211 YPVCPDPHLAMGLAPHTDSSLLTILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKT-HHRVSAAYFAGPPKNLQI-GPLTS--DKNHPPIYRRLIWEEYL 333          
BLAST of DN621595 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 47/151 (31.13%), Postives = 75/151 (49.67%), Query Frame = 3
Query:  105 HYYPYCPQPDL-------TVGITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQFTYTDYVTRFFTKQLDGKTLVNYYR 533
            ++YP CP  +         +G   HTDP  +++L  ++  GLQI   +  W+ V P   +   N+GD LQ+M+N  + SV HRVLAN   + R+S+  F  PS    +  P   LI  E    + +FT+++Y    +  +L    L  + R
Sbjct:  173 NHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCK-KSRVSMIYFAGPSLTQRI-APLTCLIDNEDERLYEEFTWSEYKNSTYNSRLSDNRLQQFER 321          
BLAST of DN621595 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 44/123 (35.77%), Postives = 69/123 (56.10%), Query Frame = 3
Query:  141 VGITSHTDPGPLTILLQDDKGGLQI--KHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQFTYTDYVTRFFTKQL 503
            VG   HTDP  +++L  ++  GLQI  K G  WV V P   +  IN+GD LQ+M+N  + SV+HRVLA++    RIS+  F  P     +  P P L+  +    +++FT++ Y +  +  +L
Sbjct:  202 VGFGEHTDPQIISVLRSNNTAGLQICVKDGS-WVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTR-RSRISMIYFGGPPLSQKI-APLPCLVPEQDDWLYKEFTWSQYKSSAYKSKL 321          
BLAST of DN621595 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 45/134 (33.58%), Postives = 70/134 (52.24%), Query Frame = 3
Query:  141 VGITSHTDPGPLTILLQDDKGGLQI--KHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQFTYTDYVTRFFTKQLDGKTLVNYYRL 536
            +G   HTDP  +++L  +D  GLQI  K G  WVDV P   +  + +GD LQ+M+N  + SV+HRV+ N+    RIS+  F  P   + +  P   L+  +    + +FT++ Y    +      KT +  YRL
Sbjct:  197 IGFGEHTDPQLISLLRSNDTEGLQICVKDGT-WVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTK-RSRISMIYFAGPPLSEKI-APLSCLVPKQDDCLYNEFTWSQYKLSAY------KTKLGDYRL 321          
The following BLAST results are available for this feature:
BLAST of DN621595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
G3OX3_ARATH1.217e-1434.65Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX1_ARATH3.542e-1431.13Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G2OX2_ARATH1.943e-1235.77Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX3_ARATH1.645e-1133.58Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621595 ID=DN621595; Name=DN621595; organism=Citrus sinensis; type=EST; length=691bp
AAAAGCTCGGAGAGCTTTTGTTTGGGCTGCTGTGTGAAGGTTTGGGGTTG
AAAACCGATAAGTTGAAGGAAAATACCTTCCTGGAAGGGAGGATGATGGT
GGGCCATTATTATCCCTACTGTCCGCAGCCTGATCTGACAGTGGGGATCA
CATCTCATACTGATCCAGGGCCATTGACAATCTTGTTGCAAGATGATAAA
GGTGGGCTGCAAATTAAGCATGGTGAGGAATGGGTGGATGTTAAACCAGT
TCCAGGAGCTCTGGTTATTAACATTGGAGATATACTTCAGATTATGTCCA
ATGATGAATACATAAGTGTAGAGCATAGAGTATTGGCTAATTCGTCCCTG
GAACCACGAATCTCAATTGCTGTTTTCTTCAATCCAAGCGAGAGGGACAG
CCTTTATGGACCATTCCCGGAGCTGATATCCCCAGAGAAGCCAGCTCGTT
TTCGGCAGTTCACATACACGGACTATGTAACAAGGTTCTTCACAAAACAG
TTAGATGGAAAAACATTGGTGAATTACTATAGGCTGTAAGAAACAAAATT
TGGTAAATCTGGTTGTTTGTGCCTGTATAAACTATTCTTGCGTAAGAATA
ACAATTCAAGTGCTCGTCTCATTGAAACTACAGTATGTATATATTGTTGC
TATTCACTAATTATAGCAATGTTGGGCTTCAAAAAAAAAAA
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