DN621560

Overview
NameDN621560
Unique NameDN621560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_ACIBY (S-adenosylmethionine synthetase OS=Acinetobacter baumannii (strain AYE) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD--FTWE 713
            KVDRS AY  R  AK+IVA+GLA +C +QVSYAIGV EP S+ ++T+ T K+ D+ I+++V+E+FD RP  I   L+L +     + +TAAYGHFGRE  +  FTWE
Sbjct:  271 KVDRSAAYAGRYVAKNIVAAGLADKCEIQVSYAIGVAEPTSISINTFGTAKVSDELIIQLVREHFDLRPFGITRMLNLIQ---PMYKQTAAYGHFGREGSNTAFTWE 374          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_WIGBR (S-adenosylmethionine synthetase OS=Wigglesworthia glossinidia brevipalpis GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = -3
Query:  393 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVV 713
            KVDRS AY +R  AK+IVASGLA RC +Q+SYAIGV  P+S+F++T+ T KI +K+++ ++ ENFD RP  + + LDL +     + +TA YGHF +    F WE +
Sbjct:  270 KVDRSAAYALRYVAKNIVASGLADRCEIQISYAIGVSNPISIFIETFGTQKISNKKLINLIHENFDLRPHGLIVMLDLLK---PIYRETAVYGHFSK--IHFPWEKI 371          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_SYNS3 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9311) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = -3
Query:  393 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKR----GGNSRFLKTAAYGHFGREDPDFTWEVV 713
            KVDRS AY  R  AK++VA+GLA R  VQ+SYAIGV +P+S+ V+++ +GK+ + E+  +V+E+FD RPG I     L+      G   +  TAAYGHFGR D +  WE V
Sbjct:  288 KVDRSAAYAARYVAKALVAAGLANRAEVQLSYAIGVAKPVSILVESFGSGKVSNAELTDLVQEHFDLRPGAIIEQFKLREMPSLNGGRFYRDTAAYGHFGRPDLNLPWEDV 398          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_SHESR (S-adenosylmethionine synthetase OS=Shewanella sp. (strain MR-7) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+T+ TGK+ ++ ++++V+++FD RP  +   L+L R     +  TAAYGHFGR   +F WE
Sbjct:  270 KVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVETFGTGKVSEEVLIKLVRQHFDLRPYGLTEMLNLAR---PIYQATAAYGHFGRN--EFPWE 369          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_SHESM (S-adenosylmethionine synthetase OS=Shewanella sp. (strain MR-4) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+T+ TGK+ ++ ++++V+++FD RP  +   L+L R     +  TAAYGHFGR   +F WE
Sbjct:  270 KVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVETFGTGKVSEEVLIKLVRQHFDLRPYGLTEMLNLAR---PIYQATAAYGHFGRN--EFPWE 369          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_SHESA (S-adenosylmethionine synthetase OS=Shewanella sp. (strain ANA-3) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+T+ TGK+ ++ ++++V+++FD RP  +   L+L R     +  TAAYGHFGR   +F WE
Sbjct:  270 KVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVETFGTGKVSEEVLIKLVRQHFDLRPYGLTEMLNLAR---PIYQATAAYGHFGRN--EFPWE 369          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_SHEON (S-adenosylmethionine synthetase OS=Shewanella oneidensis GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+T+ TGK+ ++ ++++V+++FD RP  +   L+L R     +  TAAYGHFGR   +F WE
Sbjct:  270 KVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVETFGTGKVSEEVLIKLVRQHFDLRPYGLTEMLNLAR---PIYQATAAYGHFGRS--EFPWE 369          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_PSEPW (S-adenosylmethionine synthetase OS=Pseudomonas putida (strain W619) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 57/115 (49.57%), Postives = 74/115 (64.35%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD----------FTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++T+ TGK+ D +I+++V+E FD RP  I   LDL    +  + +TAAYGHFGR              FTWE
Sbjct:  271 KVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISINTFGTGKVSDDKIIQLVRECFDLRPYAITKMLDLL---HPMYQETAAYGHFGRTPQQKTVGDDTFTTFTWE 382          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_ACTSZ (S-adenosylmethionine synthetase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=metK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = -3
Query:  393 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVV 713
            KVDRS AY  R  AK+IVA+GLA RC +Q+SYAIGV EP S+ ++T+ TGK+ ++ ++++V+E FD RP  +   LDL R     + +TAAYGHFGRE   F WE +
Sbjct:  270 KVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGVAEPTSIMLETFGTGKVANELLVKLVREFFDLRPYGLIQMLDLIR---PIYRETAAYGHFGRE--QFPWEKI 371          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_THEFY (S-adenosylmethionine synthetase OS=Thermobifida fusca (strain YX) GN=metK PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA R  VQV+YAIG   P+ VF++T+ T K+  +++ + V E FD RP  I  +LDL R     + +T+ YGHFGRE PDFTWE
Sbjct:  282 KVDRSAAYATRWVAKNIVAAGLADRVEVQVAYAIGKAHPVGVFLETFGTEKVAPEQLEKAVLEVFDLRPAAIIRDLDLLR---PIYSQTSVYGHFGRELPDFTWE 383          
The following BLAST results are available for this feature:
BLAST of DN621560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ACIBY4.873e-2252.34S-adenosylmethionine synthetase OS=Acinetobacter b... [more]
METK_WIGBR6.364e-2248.60S-adenosylmethionine synthetase OS=Wigglesworthia ... [more]
METK_SYNS36.364e-2247.75S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SHESR6.364e-2251.43S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_SHESM6.364e-2251.43S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_SHESA6.364e-2251.43S-adenosylmethionine synthetase OS=Shewanella sp. ... [more]
METK_SHEON6.364e-2251.43S-adenosylmethionine synthetase OS=Shewanella onei... [more]
METK_PSEPW6.364e-2249.57S-adenosylmethionine synthetase OS=Pseudomonas put... [more]
METK_ACTSZ6.364e-2251.40S-adenosylmethionine synthetase OS=Actinobacillus ... [more]
METK_THEFY8.312e-2252.38S-adenosylmethionine synthetase OS=Thermobifida fu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621560 ID=DN621560; Name=DN621560; organism=Citrus sinensis; type=EST; length=715bp
GGCCCCCCCTTTTTTTTTCAGAGATAAGAAGTAGATGAATACTCATAATT
TGATTATGAAGAAAAAAATGCATTAATAGTACATTAACAAATAACAATGT
GTCTCCACAAACGAGCTCTTCTTCCATCTCTATTTCTCTTCCTAGCATAT
CTCATACAGGCAACTTCTCTGTAATTCTTTCATCGACTATGACTCAATTA
GACCACATATATCTTTCTATTATGGCAAAGATAATACAAATTTATTTATA
AAAAAAAAAGGCCAAGACCAAGAGAGAAAAAAGACAGAATCTGACAGGCA
GACGAAAGAACAAGTAAATTATTGAGTTCAAACAAAGAATGAAACTGCAT
ACTTAAATTCTACTCTTGGGGTTTCTCATACTTGAGGGGCTTCACCACCT
CCCATGTGAAGTCAGGATCCTCCCTTCCAAAATGCCCATATGCAGCAGTC
TTCAAAAACCTGCTATTTCCTCCCCTCTTGAGATCCAAGTTAATGGCAAT
CATTCCAGGCCTGAAATCAAAGTTCTCCTTCACAATCCTCAGGATCTCCT
TGTCCGGAATCTTTCCAGTTCGATAAGTGTCAACAAACACTGAAAGGGGC
TCTGGGACACCAATAGCATAAGAAACCTGCACAATGCAGCGGCGAGCAAG
GCCACTGGCAACGATGCTCTTTGCTGCCTGCCTCACAATGTAAGCACCAC
TTCTATCAACCTTGG
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