DN621560

Overview
NameDN621560
Unique NameDN621560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_PROMM (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=metK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = -3
Query:  393 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLK-----RGGNSRFLKTAAYGHFGREDPDFTWEVV 713
            KVDRS AY  R  AK +VA+GLA+R  VQ+SYAIGV +P+S+ V+++ TGK+ + E+  +V+++FD RPG I     L+     RGG   +  TAAYGHFGR D    WE V
Sbjct:  288 KVDRSAAYAARFVAKCLVAAGLAQRAEVQLSYAIGVAKPVSILVESFGTGKVTNDELTALVQDHFDLRPGAIIEQFKLRQLPQQRGGRF-YQDTAAYGHFGRPDLKLPWEDV 398          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_PARDP (S-adenosylmethionine synthetase OS=Paracoccus denitrificans (strain Pd 1222) GN=metK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  375 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGR---EDPDFTWE---VVKPLKYE 713
            KVDRS AY  R  AK++VA+GLA+RC++Q+SYAIGV +PLS++ DT+ T ++P+ EI R V    D  P  I  +L L R     + +TAAYGHFGR    D  F+WE   +V+ +K E
Sbjct:  272 KVDRSAAYAARYLAKNVVAAGLAKRCVIQLSYAIGVAKPLSIYADTFGTSEVPEAEIERAVSRAMDLTPRGIREHLALCR---PIYRRTAAYGHFGRAPDADGGFSWERTDLVEAIKRE 387          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_HAEIN (S-adenosylmethionine synthetase OS=Haemophilus influenzae GN=metK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = -3
Query:  393 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVV 713
            KVDRS AY  R  AK+IVA+GLA RC +Q+SYAIGV EP S+ V+T+ TGK+ ++ ++ +V+E FD RP  +   LDL +     + +TAAYGHFGRE   F WE V
Sbjct:  270 KVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGVAEPTSIMVETFGTGKVANELLVSLVREFFDLRPYGLIKMLDLIQ---PIYRETAAYGHFGRE--QFPWEKV 371          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_ENT38 (S-adenosylmethionine synthetase OS=Enterobacter sp. (strain 638) GN=metK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+T+ T K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGRE   F WE
Sbjct:  270 KVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKLPTEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_DESAP (S-adenosylmethionine synthetase OS=Desulforudis audaxviator (strain MP104C) GN=metK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS +Y  R  AK+IVA+GLA RC V V+YAIGV +P+++ VDT+ TG I ++ + ++V E+FD RP  I  +LDL+R     + + AAYGHFGR D +  WE
Sbjct:  279 KVDRSASYAARYVAKNIVAAGLASRCEVHVAYAIGVAKPVALRVDTFGTGLINEERLEKLVLEHFDLRPAAIIHHLDLRR---PIYRQVAAYGHFGRGDLNLPWE 380          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_PSYCK (S-adenosylmethionine synthetase OS=Psychrobacter cryohalolentis (strain K5) GN=metK PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 56/116 (48.28%), Postives = 77/116 (66.38%), Query Frame = -3
Query:  372 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD--FTWEVVKPLKYEK 713
            KVDRS AY VR  AK+IVA+G+A RC VQVSYAIGV EP S+ ++T+ T KI + EI+ +++ +FD RP  I   L+L +     + +TA++GHFGR+  +  FTWE     K  K
Sbjct:  271 KVDRSAAYAVRYVAKNIVAAGIADRCEVQVSYAIGVAEPTSISINTFGTNKISNDEIISLIRTHFDLRPYGITRMLNLLQ---PMYQQTASFGHFGRQGSETAFTWEKTDKAKILK 383          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_NITHX (S-adenosylmethionine synthetase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=metK PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 54/108 (50.00%), Postives = 72/108 (66.67%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGR---EDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +Q++YAIGV  PLS+++DT+ TGK P+  + RIV E  D  P  I  +LDL R     + +T++YGHFGR    +  F+WE
Sbjct:  282 KVDRSAAYAARYLAKNIVAAGLADRCTLQLAYAIGVARPLSIYIDTHGTGKAPEDTLERIVSEAMDLTPRGIRKHLDLNR---PIYARTSSYGHFGRTPDNEGGFSWE 386          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_PROM5 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9515) GN=metK PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = -3
Query:  390 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDL----KRGGNSRFLKTAAYGHFGREDPDFTWEVVK 713
            KVDRS AY  R  AKSIV + LA++  VQ+SYAIGV +P+S+ VDT+ T  I    +  +++ NFD RP  I    DL    K+ G   + KTA+YGHFGR D +  WE V+
Sbjct:  288 KVDRSAAYAARYVAKSIVKAKLAKKAEVQLSYAIGVAKPISILVDTFGTSVISQDNLKELIENNFDLRPAAIIKEFDLRNLPKKLGGEFYRKTASYGHFGRNDLNLPWESVE 399          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_NOSP7 (S-adenosylmethionine synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=metK PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMI-----AINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA +  +Q+SYAIGV  P S+ VDT+ TGK+ ++ +L ++ ++F+ RP  I       NL  +RGG   +   AAYGHFGR D D  WE
Sbjct:  291 KVDRSAAYAARYVAKNIVAAGLAEKVEIQLSYAIGVARPTSILVDTFGTGKVDEETLLELINQHFELRPAGIIHTFNLRNLPSERGGRF-YQDVAAYGHFGRADLDLPWE 399          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_LISMO (S-adenosylmethionine synthetase OS=Listeria monocytogenes GN=metK PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRSGAY  R  AK+IVA+GLA++  VQV+YAIGV  P+S+ +DTY T    ++E++  V   FD RP  I   LDL+R     + +TAA+GHFGR D D  WE
Sbjct:  284 KVDRSGAYAARYVAKNIVAAGLAKKVEVQVAYAIGVARPVSISIDTYGTSDYSEQELIDGVNALFDLRPAGIIHMLDLRR---PIYRQTAAFGHFGRSDLDLPWE 385          
The following BLAST results are available for this feature:
BLAST of DN621560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_PROMM1.418e-2149.11S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PARDP1.418e-2147.90S-adenosylmethionine synthetase OS=Paracoccus deni... [more]
METK_HAEIN1.418e-2152.34S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_ENT381.418e-2153.33S-adenosylmethionine synthetase OS=Enterobacter sp... [more]
METK_DESAP1.418e-2150.48S-adenosylmethionine synthetase OS=Desulforudis au... [more]
METK_PSYCK1.852e-2148.28S-adenosylmethionine synthetase OS=Psychrobacter c... [more]
METK_NITHX1.852e-2150.00S-adenosylmethionine synthetase OS=Nitrobacter ham... [more]
METK_PROM52.418e-2147.32S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_NOSP72.418e-2148.18S-adenosylmethionine synthetase OS=Nostoc punctifo... [more]
METK_LISMO2.418e-2151.43S-adenosylmethionine synthetase OS=Listeria monocy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621560 ID=DN621560; Name=DN621560; organism=Citrus sinensis; type=EST; length=715bp
GGCCCCCCCTTTTTTTTTCAGAGATAAGAAGTAGATGAATACTCATAATT
TGATTATGAAGAAAAAAATGCATTAATAGTACATTAACAAATAACAATGT
GTCTCCACAAACGAGCTCTTCTTCCATCTCTATTTCTCTTCCTAGCATAT
CTCATACAGGCAACTTCTCTGTAATTCTTTCATCGACTATGACTCAATTA
GACCACATATATCTTTCTATTATGGCAAAGATAATACAAATTTATTTATA
AAAAAAAAAGGCCAAGACCAAGAGAGAAAAAAGACAGAATCTGACAGGCA
GACGAAAGAACAAGTAAATTATTGAGTTCAAACAAAGAATGAAACTGCAT
ACTTAAATTCTACTCTTGGGGTTTCTCATACTTGAGGGGCTTCACCACCT
CCCATGTGAAGTCAGGATCCTCCCTTCCAAAATGCCCATATGCAGCAGTC
TTCAAAAACCTGCTATTTCCTCCCCTCTTGAGATCCAAGTTAATGGCAAT
CATTCCAGGCCTGAAATCAAAGTTCTCCTTCACAATCCTCAGGATCTCCT
TGTCCGGAATCTTTCCAGTTCGATAAGTGTCAACAAACACTGAAAGGGGC
TCTGGGACACCAATAGCATAAGAAACCTGCACAATGCAGCGGCGAGCAAG
GCCACTGGCAACGATGCTCTTTGCTGCCTGCCTCACAATGTAAGCACCAC
TTCTATCAACCTTGG
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