DN621555

Overview
NameDN621555
Unique NameDN621555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621555 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 7.828e-38
Identity = 74/153 (48.37%), Postives = 94/153 (61.44%), Query Frame = 1
Query:  151 WQSGHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITN 597
            W  G ATFY                  N     Y T TAALST LF +G  CG CYE++C   P WC PGS  +++T TN CPPN  L ND+GGWCNPP  HFDMA P+FL++AQ  AGIVP+ +RR+PC + GG+RF + G+ Y+ L+ + N
Sbjct:   52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMN 203          
BLAST of DN621555 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.335e-37
Identity = 75/159 (47.17%), Postives = 100/159 (62.89%), Query Frame = 1
Query:  133 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQY-RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITN 597
            G    GW   HAT+Y              Y N Y  G+G +TAALS  LF +G SCG CY+++C+   DPKWCL G ++ VTATNFCP     +N+N GWCN P  HFDM+ PAF +IA+    GIVP+ +RR+ C ++GG+RFT+ G   FN+V+I+N
Sbjct:   21 GMCSNGWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCP-----TNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISN 174          
BLAST of DN621555 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.928e-36
Identity = 79/168 (47.02%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  106 LNFCFRGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITN 597
            L+ C R   G Y   W+ G AT+                 YG+L    YG  TA +S ALF  G +CG CYE++C N   WCL GS  ++VTAT+FC PNL LS+D GGWCN P +HF+M+E AFL++A+ +A IVP+ FRR+ C + GG+RFT+ G + F  VLITN
Sbjct:   18 LSGCIRLGNGGYEE-WRMGSATYIKESLGHPLNDGGGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITN 184          
BLAST of DN621555 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.327e-36
Identity = 73/150 (48.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:  151 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITN 597
            W+S  A++Y              +G+L   GYG  T  LSTALF  G +CG CYE+KC +D K+CLPG SI+VTATNFC PN  L  D GG CNPP  HF +   +F +IA ++AG++PI +RR+ C + GG+RF V G S+F  VLI+N
Sbjct:   33 WRSAKASYYAADPEDAIGGACG-FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISN 181          
BLAST of DN621555 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.784e-35
Identity = 70/150 (46.67%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  151 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITN 597
            W+   AT+Y              YG+L   GYG  T  LS  LF  G  CG+C+E++C +D +WC+PG SII+TATNFC PN     D GG CNPP +HF +   AF +IA ++AG +P+ +RRI C K+G +RFTV+G   F  VLITN
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITN 189          
BLAST of DN621555 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.956e-34
Identity = 63/128 (49.22%), Postives = 91/128 (71.09%), Query Frame = 1
Query:  220 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITN 597
            YG+L    +   +A LS  LFN G SCG+C E++C N  +WCL GS  ++VTAT+FCPPN  LS+D GGWCN P +H +++  AF  IA+ RA ++PI +RR+ C ++GG+RF+++G S+F  VLI+N
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISN 180          
BLAST of DN621555 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.689e-32
Identity = 71/152 (46.71%), Postives = 89/152 (58.55%), Query Frame = 1
Query:  151 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITN 597
            W  G ATFY              YGNLY Q YG N AALST LFN+G SCG CY + C+    P WC  G +I VT TN+           GGWCN    +FDM++PA+  I  Y AGIVPI ++++ C + GG+RF +NG +YF LVL+TN
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTN 163          
BLAST of DN621555 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 3.763e-32
Identity = 64/126 (50.79%), Postives = 86/126 (68.25%), Query Frame = 1
Query:  220 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITN 597
            YG+L   GYG  TAALSTALFN+G SCG+CYE+ C  +P+ CL GSI +TAT+ CPP  A       WC  P +HFD++ P F++IAQ +A +VP+ +RR+PCAK GG++F V G+     +L  N
Sbjct:   69 YGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYN 187          
BLAST of DN621555 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25
Identity = 59/151 (39.07%), Postives = 89/151 (58.94%), Query Frame = 1
Query:  145 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITN 597
            G W  GHATFY               G   + GYG  TAA+S ALF+NG  CG+CYE+K ++        +++VTATN  PP +   N   G      +HFD+  PAFL IA+ + G+VP+S+R++ C ++GGI++T+ G+  +N+V++ N
Sbjct:   80 GPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPV---NGMKG------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKN 214          
BLAST of DN621555 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 49/160 (30.63%), Postives = 72/160 (45.00%), Query Frame = 1
Query:  142 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKGGIRFTVNGHS--YFNLVLI 591
            G GW SG AT+Y              Y +   Q  + +  AA   +LF NG  CGSCY++KC  + + C    + V  T+ CP         GG C     HFDM+  AF  +A          AG++ I ++R+PC     + F V+  S  Y+  +L+
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACSGRPVTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILV 191          
The following BLAST results are available for this feature:
BLAST of DN621555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EXP17_ORYSJ7.828e-3848.37Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH1.335e-3747.17Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP16_ORYSJ1.928e-3647.02Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ORYSJ7.327e-3648.67Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH2.784e-3546.67Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP20_ARATH8.956e-3449.22Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP20_ORYSJ1.689e-3246.71Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH3.763e-3250.79Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP26_ORYSJ3.411e-2539.07Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ3.312e-1230.63Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621555 ID=DN621555; Name=DN621555; organism=Citrus sinensis; type=EST; length=599bp
ATCTCTCTTTTTCTTTACAAAAAAACACATAAACATAAGCAGCCAGCAGT
AGCAGCCATGACCAATATTGCAGCATCATCTAGTGTTGCTCTCCTTTTGT
TTGTGCTCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGG
TGGCAAAGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCAC
AATGGGTGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGA
CTAACACTGCAGCACTCAGTACCGCTCTATTCAACAATGGCCTAAGCTGT
GGTTCATGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCC
CGGCTCCATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCC
TGTCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGAC
ATGGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGTATCGT
CCCAATTTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGT
TTACCGTCAATGGACACTCATACTTCAACCTGGTTTTGATCACAAATGT
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