DN621555

Overview
NameDN621555
Unique NameDN621555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621555 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 45/159 (28.30%), Postives = 71/159 (44.65%), Query Frame = 1
Query:  148 GWQSGHATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG---GIRFTVNGHSYFNLVLI 591
            GW  G AT+Y              Y G++    + +  AA S +++ +G  CGSCY++KC  +P  C    + V  T+ CP         GG C     HFD++  AF  +A+         AG +P+ + R+PC  +G     R     + Y+  VL+
Sbjct:   37 GWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLV 185          
BLAST of DN621555 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 45/149 (30.20%), Postives = 67/149 (44.97%), Query Frame = 1
Query:  124 GTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWC-LPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG 540
            G+ G  GGGW +  AT+Y               G  N+    +   T+  +  LF +G  CGSCY+++C   P    LP ++I+T  N+ P +              L HFD++  AF  +A+         AGI+ I FRR+PC   G
Sbjct:   83 GSSGGGGGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPACSGLPETVIITDMNYYPVS--------------LYHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPG 217          
The following BLAST results are available for this feature:
BLAST of DN621555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EXB14_ORYSJ1.644e-1128.30Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXPB7_ORYSJ4.782e-1130.20Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621555 ID=DN621555; Name=DN621555; organism=Citrus sinensis; type=EST; length=599bp
ATCTCTCTTTTTCTTTACAAAAAAACACATAAACATAAGCAGCCAGCAGT
AGCAGCCATGACCAATATTGCAGCATCATCTAGTGTTGCTCTCCTTTTGT
TTGTGCTCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGG
TGGCAAAGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCAC
AATGGGTGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGA
CTAACACTGCAGCACTCAGTACCGCTCTATTCAACAATGGCCTAAGCTGT
GGTTCATGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCC
CGGCTCCATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCC
TGTCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGAC
ATGGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGTATCGT
CCCAATTTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGT
TTACCGTCAATGGACACTCATACTTCAACCTGGTTTTGATCACAAATGT
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