DN621554

Overview
NameDN621554
Unique NameDN621554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.216e-45
Identity = 79/134 (58.96%), Postives = 108/134 (80.60%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 678
            PPN AL+ND+GGWCNPP  HFDM++PA+  I  YRAGIVP+ ++++ C ++GG+RFTV+G +YF LVLITNV G+G V ++S+KGSKTGW  ++RNWG NWQ NS L GQ+LSF++T++ G+T+  N+VVP  W
Sbjct:  108 PPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWW 241          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.216e-45
Identity = 79/135 (58.52%), Postives = 99/135 (73.33%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 678
            PPN  L +DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YFNLVL+TNV   G + S+ I GS  T W  M RNWG NW S SYL GQ+LSF++T  DG+T+   N+VP  W
Sbjct:  115 PPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGW 249          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.779e-45
Identity = 79/135 (58.52%), Postives = 99/135 (73.33%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 678
            PPN  L +DNGGWCNPP  HFDMA+PA+ +I  YRAGI+P+ ++R+PC KKGG+RFT+NGH YFNLVL+TNV   G + S+ + GS  T W  M RNWG NW S SYL GQ LSF++T  DG+T+   N+VP  W
Sbjct:  133 PPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 267          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.178e-44
Identity = 77/134 (57.46%), Postives = 100/134 (74.63%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 678
            PPN + S D GGWCNPP +HFDM++PA+  IA Y +GIVP+ + R PC + GGIRF + GH Y+ LVL+TNV G+G V +  +KGS T W +MSRNWG+NWQSN+YL GQ+LSF++ A DG  VT+ +V P NW
Sbjct:  107 PPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANW 240          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.178e-44
Identity = 76/135 (56.30%), Postives = 101/135 (74.81%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 678
            PPN  L +D+GGWCNPP  HFDMA+PA+ +I  YR GI+P+ ++R+PC KKGG+RFT+NGH YF LVL+TNVG AG + ++ +KGSK+  W AM+ NWG  W S +YL GQ LSF++T +DG+T+   NVV   W
Sbjct:  115 PPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGW 249          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.457e-44
Identity = 76/135 (56.30%), Postives = 98/135 (72.59%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 678
            PPN  L +DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YF LVL+TNV  AG + S+ + GS T  W  M+RNWG  W S +YL GQ LSF++T +D +T+   NVVP  W
Sbjct:  120 PPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGW 254          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.588e-43
Identity = 76/134 (56.72%), Postives = 104/134 (77.61%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 678
            PPN AL +++GGWCNPP  HFDMAEPA+LQI  Y+AGI+P+ ++++ C ++GGIRFT+ G ++F LVL++NV G+G V SVS+KG  TGW  ++RNWG NWQ NS L GQ+LSF +T++ G+T+   NVVP  W
Sbjct:  108 PPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWW 241          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.588e-43
Identity = 76/134 (56.72%), Postives = 104/134 (77.61%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 678
            PPN ALS+++GGWCNPP  HFDMAEPA+LQI  Y+AGIVP+ ++R+PC K+GG+RFT+ G +YF LVLI+NV G+G + SV +KG  T    +SRNWG NWQS++ L GQ+L+F +T++ G+T+   N+VP  W
Sbjct:  113 PPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWW 246          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.535e-41
Identity = 73/134 (54.48%), Postives = 98/134 (73.13%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 678
            PPN AL +D GGWCNPP +HFDM++PA+ +I  YRAGIVP+ +RR+ C ++GG+RFTV G  +F LVL+ NV G+G V +VS++G+ TGW  MSRNWG NWQS + L GQ LSF +T + G+ +   +V P  W
Sbjct:  108 PPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGW 241          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.376e-41
Identity = 71/135 (52.59%), Postives = 104/135 (77.04%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTA-SDGRTVTSNNVVPGNW 678
            PPN    ++ GGWCNPP  HFDMA+PAF+++A +RAGI+P+++RR+PC + GG+RF   G+SY+ L+ + NVGGAGD+ S+++KGS+T W +MS NWG ++Q+ S L GQSLSF++T+ + G T+ + NV P NW
Sbjct:  115 PPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANW 249          
The following BLAST results are available for this feature:
BLAST of DN621554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP28_ORYSJ2.216e-4558.96Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ2.216e-4558.52Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ3.779e-4558.52Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ4.178e-4457.46Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP13_ORYSJ4.178e-4456.30Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ5.457e-4456.30Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ1.588e-4356.72Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ1.588e-4356.72Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ2.535e-4154.48Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXPA7_ARATH7.376e-4152.59Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06N24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621554 ID=DN621554; Name=DN621554; organism=Citrus sinensis; type=EST; length=679bp
TTTTTTTTTTTTTTTTTGAATGAAATTATACCCGTTCATTCAATTGAAGT
AATAACTATATATAGAACACAATCATTTCTATTTATAGAGGCCTAGCGGG
TGCCAACAGACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGA
GCCTCACCTACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAA
TTCAATTAAATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGA
CCACCCTCAAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTT
GCTAGTCACAGTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTT
GGCCGTTAAGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGAC
ATTGCTTGCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACATC
TCCTGCTCCTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTC
CATTGACGGTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTG
AAGGAAATTGGGACGATACCGGCGCGGTATTGGGCAATTTGCAAGAAAGC
GGGCTCAGCCATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGCCGT
TGTCGTTAGACAGGGCAAGGTTAGGTGGG
back to top