DN621554

Overview
NameDN621554
Unique NameDN621554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.461e-37
Identity = 69/134 (51.49%), Postives = 95/134 (70.90%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 678
            PPN  L    GGWCN    HFDM++PA+  I  Y AGIVPI ++++ C + GG+RFT+ G +YF LVL+TN+ G+G + S+S+KGS TGW  MSRNWG NWQ  + L GQ+LSF +T++ G+T+  ++VVP  W
Sbjct:  104 PPNYDLPY--GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGW 235          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.461e-37
Identity = 70/134 (52.24%), Postives = 95/134 (70.90%), Query Frame = -2
Query:  277 NLALSNDNGGWCNPPLQHFDMAEPAFLQIAQY-RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 672
            N   +N+N GWCN P  HFDM+ PAF +IA+    GIVP+ +RR+ C ++GG+RFT+ G   FN+V+I+NVGG G V SV+++GSK   W  M+RNWG NWQS+  L GQ LSF++T +D +T T  NVVP +W
Sbjct:  105 NFCPTNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSW 238          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.439e-36
Identity = 67/134 (50.00%), Postives = 95/134 (70.90%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 678
            PPN  L    GGWCN    HFDM++PA+  I  Y AGI+PI ++++ C + GG+RFT+NG +YF LVL+TN+ G+G + S+S+KGS TGW  M+RNWG NWQ  + L GQ+LSF +T++ G+T+  ++ VP  W
Sbjct:  104 PPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 235          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.330e-36
Identity = 67/134 (50.00%), Postives = 94/134 (70.15%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 678
            PPN  LS+D GGWCN P +H +++  AF  IA+ RA ++PI +RR+ C ++GG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W  M+RNWGQNW S+  L GQSLSF++T   G+T+ S +V P  W
Sbjct:  110 PPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYW 243          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.760e-34
Identity = 62/124 (50.00%), Postives = 90/124 (72.58%), Query Frame = -2
Query:  277 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 648
            GGWCN    +FDM++PA+  I  Y AGIVPI ++++ C + GG+RF +NG +YF LVL+TN+ G+G + S+S+KGS TGW  M+RNWG NWQ  + L GQ+LSF +T++ G+T+  ++ VP  W
Sbjct:  103 GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 226          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.920e-34
Identity = 66/138 (47.83%), Postives = 97/138 (70.29%), Query Frame = -2
Query:  277 PPNLALSNDNGG--WCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIK-GSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTA-SDGRTVTSNNVVPGNW 678
            PPN A   D GG  WCNPP  HFD+++PAF+++A +RAGIVP+ +RR+PCA+ GG+RF + G+ Y+ L  + NV GAGDV  + +K G   GW  MS NWG ++Q+ + L GQ+LSF++T+ + G+T+ +  V P +W
Sbjct:  116 PPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASW 253          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.334e-33
Identity = 63/122 (51.64%), Postives = 86/122 (70.49%), Query Frame = -2
Query:  277 WCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 642
            WC  P +HFD++ P F++IAQ +A +VP+ +RR+PCAK GG++F V G+     +L  NVGGAGD+ +VS KGSKT W  MSR WGQNW +N  L GQS+S ++T SDG T    +V+P +W
Sbjct:  129 WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASW 250          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.858e-30
Identity = 64/139 (46.04%), Postives = 92/139 (66.19%), Query Frame = -2
Query:  277 PPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG--WQAMSRNWGQNWQSNSYL-NGQSLSFQLT--ASDGRTVTSNNVVPGNW 678
            PPN  L ND+GGWCNPP  HFDMA P+FL++AQ  AGIVP+ +RR+PC + GG+RF + G+ Y+ L+ + NVGGAGDV S+S+K S  G  W   + NWG  +Q  + L N   L+ +LT  ++  +T+  ++ +   W
Sbjct:  133 PPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWW 271          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.198e-28
Identity = 51/117 (43.59%), Postives = 84/117 (71.79%), Query Frame = -2
Query:  277 QHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 624
            +HFD+  PAFL IA+ + G+VP+S+R++ C ++GGI++T+ G+  +N+V++ NVGGAGDV  +++KG+K   W  + R+WGQ W++ + L G+SL+F++   D R  TS  V P +W
Sbjct:  162 EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDW 278          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = -2
Query:  277 GGWCNPPLQHFDMAEPAFLQIAQY-------RAGIVPISFRRIPCAKKGGIRFTVNGHS--YFNLVLITNVGGAGDVHSVSIKGSKTG--WQAMSRNWGQNWQSNSYLN---GQSLSFQLTASDGRTVTSNNVVPGNW 648
            GG C     HFDM+  AF  +A          AG++ I ++R+PC     + F V+  S  Y+  +L+    G GD+ +V I  ++ G  W+AM ++WG  W+ NS          S +LT+  G+ + +NNV+P  W
Sbjct:  124 GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGW 261          
The following BLAST results are available for this feature:
BLAST of DN621554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP18_ORYSJ6.461e-3751.49Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH6.461e-3752.24Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP19_ORYSJ1.439e-3650.00Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH9.330e-3650.00Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP20_ORYSJ1.760e-3450.00Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ3.920e-3447.83Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP21_ARATH4.334e-3351.64Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP17_ORYSJ5.858e-3046.04Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ4.198e-2843.59Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ5.885e-1431.88Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621554 ID=DN621554; Name=DN621554; organism=Citrus sinensis; type=EST; length=679bp
TTTTTTTTTTTTTTTTTGAATGAAATTATACCCGTTCATTCAATTGAAGT
AATAACTATATATAGAACACAATCATTTCTATTTATAGAGGCCTAGCGGG
TGCCAACAGACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGA
GCCTCACCTACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAA
TTCAATTAAATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGA
CCACCCTCAAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTT
GCTAGTCACAGTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTT
GGCCGTTAAGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGAC
ATTGCTTGCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACATC
TCCTGCTCCTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTC
CATTGACGGTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTG
AAGGAAATTGGGACGATACCGGCGCGGTATTGGGCAATTTGCAAGAAAGC
GGGCTCAGCCATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGCCGT
TGTCGTTAGACAGGGCAAGGTTAGGTGGG
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