DN621554

Overview
NameDN621554
Unique NameDN621554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 46/138 (33.33%), Postives = 74/138 (53.62%), Query Frame = -2
Query:  277 GGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG-GIRFTVN--GHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSL----SFQLTASDGRTVTSNNVVPGNW 648
            GG C     HFDM+  +   +A+         AGI+ + +RR+PC   G  I F V+   + ++  VLI    G GD+++V +  +  GW  M +NWG  W+ NS   G++L    S +LT+  G+ + +NNV+P +W
Sbjct:  143 GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNSN-TGKALKAPFSLRLTSDSGKVLVANNVIPASW 279          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 44/144 (30.56%), Postives = 71/144 (49.31%), Query Frame = -2
Query:  277 GGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG---GIRFTVNGHSYFNLVLITNVGGAGDVHSVSI-----KGSKTGWQAMSRNWGQNWQSNSYLNGQS-----LSFQLTASDGRTVTSNNVVPGNW 648
            GG C     HFD++  AF  +A+         AG +P+ + R+PC  +G     R     + Y+  VL+ +  G GD+ +V +      G    W AM ++WG  W+ NS   G +     +S +LT+  GRT+ ++NV+P  W
Sbjct:  117 GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNS---GPAPLQAPMSIRLTSGSGRTLVASNVIPAGW 257          
BLAST of DN621554 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 45/138 (32.61%), Postives = 72/138 (52.17%), Query Frame = -2
Query:  277 GGWCNPPLQHFDMAEPAFLQIA------QYRA-GIVPISFRRIPCAKKGGIRFT----VNGHSYFNLVLITNVGGAGDVHSVSIK--GSKTGWQAMSRNWGQNWQSNSYLNGQS-LSFQLTASDGRTVTSNNVVPGNW 648
            GG C     HFD++  AF  +A      Q RA G++ I + R+PC   GG++ T    V  +  +  VL+    G GD+  V +   G+   W  M ++WG  W+ N+    Q+  S +LT+S G+T+ ++NV+P  W
Sbjct:  116 GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNAGSALQAPFSIRLTSSSGKTLVASNVIPSGW 252          
The following BLAST results are available for this feature:
BLAST of DN621554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXB11_ORYSJ3.814e-1333.33Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ2.472e-1230.56Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB15_ORYSJ2.093e-1132.61Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06N24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621554 ID=DN621554; Name=DN621554; organism=Citrus sinensis; type=EST; length=679bp
TTTTTTTTTTTTTTTTTGAATGAAATTATACCCGTTCATTCAATTGAAGT
AATAACTATATATAGAACACAATCATTTCTATTTATAGAGGCCTAGCGGG
TGCCAACAGACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGA
GCCTCACCTACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAA
TTCAATTAAATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGA
CCACCCTCAAAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTT
GCTAGTCACAGTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTT
GGCCGTTAAGATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGAC
ATTGCTTGCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACATC
TCCTGCTCCTCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTC
CATTGACGGTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTG
AAGGAAATTGGGACGATACCGGCGCGGTATTGGGCAATTTGCAAGAAAGC
GGGCTCAGCCATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGCCGT
TGTCGTTAGACAGGGCAAGGTTAGGTGGG
back to top