DN621544

Overview
NameDN621544
Unique NameDN621544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.029e-42
Identity = 85/125 (68.00%), Postives = 100/125 (80.00%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQMDGFD   NVKVIMATNRADT+DPALLRPGRLDRKIEFPLPDRRQKRLVF   T+KM+L+D VD+E  V RP+KIS A+I +ICQEAGM AVR +RY++  +DFE+ Y   V++  T   FY
Sbjct:  262 LNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVRASRYMVTQRDFEEAYSKVVERSGTQPAFY 386          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.099e-39
Identity = 85/129 (65.89%), Postives = 99/129 (76.74%), Query Frame = -2
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDT--DFEFYK 680
            L QMDGFDQ+ NVKVIMATNRADTLDPALLRPGRLDRKIEFP L DRR++RL+F    +KM+L+ E DL+  + R D +S A IAAI QEAG+ AVRKNRYVIL  D E+ Y T VK  +T   F+FYK
Sbjct:  300 LTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPYLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFYK 428          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.903e-39
Identity = 88/128 (68.75%), Postives = 98/128 (76.56%), Query Frame = -2
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD-FEFYK 680
            L QMDGFDQ  NVKVIMATNRADTLDPALLRPGRLDRKIEFP   DRRQ+RLVFQ  TAKM LS EVDL+ ++ RPD  S A+IAAI Q+AG+ AVRK+R VIL  D E+ Y   VK  D + F FYK
Sbjct:  262 LTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDIEEAYARAVKPTDMEQFAFYK 389          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.470e-36
Identity = 82/130 (63.08%), Postives = 98/130 (75.38%), Query Frame = -2
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPK-DFEKGYRTNVK--KPDTDFEFYK 680
            LNQMDGF+Q+ NVKVIMATNRADTLDPALLRPGRLDRKIEFP L DRR++RL+F    +KM+LS EVDL+  + R + +S A IAAI QEAG+ AVRKNRY I+P+ D E  Y   VK  +     EFY+
Sbjct:  294 LNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSGAVIAAIMQEAGLRAVRKNRYNIIPRSDLEDAYAAQVKTGQEADRLEFYR 423          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.792e-32
Identity = 68/124 (54.84%), Postives = 91/124 (73.39%), Query Frame = -2
Query:  324 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKG-----YRTNVKKPD 680
            LNQ+DGFD   +VKVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +F++ TAKMNLS++V+LE++V   D +S A+I AIC E+G+ A+R+ R  +   DF+K      YR     P+
Sbjct:  312 LNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVLYRKTAGAPE 435          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.919e-31
Identity = 62/109 (56.88%), Postives = 85/109 (77.98%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            LNQ+DGFD   +VKVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ+ T++M L+D+V L+D +   D +S A+I AIC EAG+ A+R+ R  +  +DF+K
Sbjct:  313 LNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 421          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.919e-31
Identity = 62/109 (56.88%), Postives = 85/109 (77.98%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            LNQ+DGFD   +VKVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ+ T++M L+D+V L+D +   D +S A+I AIC EAG+ A+R+ R  +  +DF+K
Sbjct:  313 LNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 421          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.919e-31
Identity = 62/109 (56.88%), Postives = 85/109 (77.98%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            LNQ+DGFD   +VKVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ+ T++M L+D+V L+D +   D +S A+I AIC EAG+ A+R+ R  +  +DF+K
Sbjct:  313 LNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 421          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.180e-30
Identity = 63/109 (57.80%), Postives = 86/109 (78.90%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            LNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R +FQ+ T+KM L+D+V+LE++V   D+ S A+I AIC EAG+ A+R+ R  +   DF+K
Sbjct:  321 LNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKK 429          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.180e-30
Identity = 66/128 (51.56%), Postives = 94/128 (73.44%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV---KKPDTDFEFY 680
            LNQ+DGFD   +VKV+MATNR ++LDPAL+RPGR+DRKIEFPLPD + KR +FQ+ T++M L  EV+LE++++  D++S A+I A+C EAG+ A+R+ R  +  +DF+K  + NV   KK     E Y
Sbjct:  316 LNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKS-KENVLYRKKEGAPEELY 442          
The following BLAST results are available for this feature:
BLAST of DN621544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
PRS6B_ENCCU1.029e-4268.0026S protease regulatory subunit 6B homolog OS=Ence... [more]
PRS6B_YEAST3.099e-3965.8926S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS6B_SCHPO6.903e-3968.7526S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS6B_ASPNG5.470e-3663.0826S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS4_DICDI4.792e-3254.8426S protease regulatory subunit 4 homolog OS=Dicty... [more]
PRS4_RAT6.919e-3156.8826S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE6.919e-3156.8826S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN6.919e-3156.8826S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_ORYSJ1.180e-3057.8026S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS4_CAEEL1.180e-3051.56Probable 26S protease regulatory subunit 4 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621544 ID=DN621544; Name=DN621544; organism=Citrus sinensis; type=EST; length=681bp
CCAAAAATAATAATAAAATTTAAAAAATACAAACGTACTTGTGCACACTA
GGCCTCGTAAAAATATTAATTCAAAGTCATAATATGGCGCAAAATCAGAC
ATAAATCAAACCATTAATTCAGATTTTTCTGATTTTTAACGCTACTCTAA
CTTAAGCTGGAATATAATGCTCAATGAAGTCTAATAAAGCCATATCACAA
GTTGTGGCGATGCATGACCAATGGCAACGATGTTCATAGTGAGCGAGACA
ATCTGACAAACATTATCAAAGTGATCTTCATAAACTCTTCTAGCCCTCTT
CACTTGTAAAATTCGAAGTCGGTGTCGGGCTTCTTCACATTGGTCCGATA
ACCCTTTTCAAAGTCCTTGGGGAGTATGACATACCTGTTCTTGCGCACAG
CATGCATTCCTGCCTCTTGGCAGATGGCTGCAATCTCAGCAGCACTGATT
TTATCCGGACGGGAAACATAATCCTCCAAGTCTACCTCATCGCTTAAGTT
CATCTTTGCCGTGCAAACCTGAAAAACGAGCCTCTTTTGTCGTCTATCAG
GCAAAGGAAATTCAATTTTTCGGTCAAGCCTTCCAGGACGGAGAAGTGCA
GGGTCCAATGTGTCAGCCCGATTTGTTGCCATGATGACCTTAACATTTAC
AGTCTGATCAAATCCGTCCATCTGATTGAGG
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