DN621544

Overview
NameDN621544
Unique NameDN621544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.542e-30
Identity = 63/109 (57.80%), Postives = 86/109 (78.90%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            LNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R +FQ+ T+KM LS++V+LE++V   D+ S A+I AIC EAG+ A+R+ R  +   DF+K
Sbjct:  316 LNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKK 424          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.013e-30
Identity = 61/109 (55.96%), Postives = 85/109 (77.98%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            LNQ+DGFD   +VKVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + K+ +FQ+ T++M L+D+V L++ +   D +S A+I AIC EAG+ A+R+ R  +  +DF+K
Sbjct:  313 LNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 421          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.485e-30
Identity = 62/109 (56.88%), Postives = 86/109 (78.90%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            LNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD + +R +FQ+ T+KM L+++V+LE++V   D+ S A+I AIC EAG+ A+R+ R  +   DF+K
Sbjct:  316 LNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKK 424          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.305e-29
Identity = 60/109 (55.05%), Postives = 84/109 (77.06%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            LNQ+DGFD   +VKVIMATNR +TLDPAL+RPGR+DRKIEFPLPD + KR +F + T++M L+++V+L + +   D +S A+I AIC EAG+ A+R+ R  +  +DF+K
Sbjct:  312 LNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 420          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.132e-26
Identity = 57/109 (52.29%), Postives = 81/109 (74.31%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            LNQ+DGFD   +VKVIMATN+ +TLDPAL+RPGR+DRKI F  PD   K+ +  + T+KMNLS++V+LE  V+  D +S A+I A+C EAG+ A+R+ R  +  +DF++
Sbjct:  310 LNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQ 418          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.143e-25
Identity = 58/117 (49.57%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  330 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 680
            LNQ+DGF+   N+KVIMATNR D LDPALLR GR+DRKIEFP P+   +  + ++ + KMNL+  +DLE   S+    S AE+ A+C EAGM+A+R+ R  +  +DFE      +KK
Sbjct:  324 LNQLDGFESHNNIKVIMATNRIDILDPALLRTGRIDRKIEFPPPNESARLEILKIHSRKMNLTKGIDLETIASKMVGCSGAEVKAVCTEAGMYALRERRVHVTQEDFEMAVHKVLKK 440          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.143e-25
Identity = 54/107 (50.47%), Postives = 78/107 (72.90%), Query Frame = -2
Query:  360 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 680
            LNQ+DGFD   ++KVIMATN+ + LDPAL+RPGR+DRKIEF +PD   K+ +F + T++M L + V++E  ++  + +S A+I AIC EAGM A+R+ R  +  KDF
Sbjct:  297 LNQLDGFDTRNDIKVIMATNKIEALDPALIRPGRIDRKIEFGMPDAATKKKIFDIHTSRMTLDESVNIELLITSKEDLSGADIKAICTEAGMIALRERRKTVTMKDF 403          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = -2
Query:  321 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDT 680
            LNQ+DGF+ T N+KVIMATNR D LDPALLRPGR+DRKIEFP P    +  + ++ +  MNL+  +DL+    + +  S AE+  +C EAGM A+R+ R  +  +DFE      + K D+
Sbjct:  274 LNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDFELAVAKVLNKGDS 393          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.344e-25
Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = -2
Query:  309 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT--NVKKPDTDFEF 680
            LNQ+DGFD    VKVIMATNR DTLDPALLRPGRLDRKIE  LP+ + +  + ++ + K+    E+D E  V   D  SAA++  +C EAGM A+R  R  ++ +DF K  R   + K+ +T  ++
Sbjct:  278 LNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVGDAKRLETKLDY 403          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.678e-25
Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = -2
Query:  324 LNQMDGFDQTV-NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPD 680
            LNQ+DGFD +  ++KVIMATNR   LDPAL+RPGR+DRKI F  PD   KR +F + T+KMNL ++V+LE+ +   D +S AEI AI  EAG+ A+R+ R  ++  DF +     +K  D
Sbjct:  319 LNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKD 438          
The following BLAST results are available for this feature:
BLAST of DN621544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
PRS4A_ARATH1.542e-3057.8026S proteasome regulatory subunit 4 homolog A OS=A... [more]
PRS4_CHICK2.013e-3055.9626S protease regulatory subunit 4 OS=Gallus gallus... [more]
PRS4B_ARATH4.485e-3056.8826S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4_DROME1.305e-2955.0526S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_YEAST5.132e-2652.2926S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS8_ENCCU1.143e-2549.5726S protease regulatory subunit 8 homolog OS=Encep... [more]
PRS4_ENCCU1.143e-2550.4726S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS8_SCHPO3.326e-2546.6726S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS10_CAEEL4.344e-2546.83Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS4_SCHPO9.678e-2549.1726S protease regulatory subunit 4 homolog OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621544 ID=DN621544; Name=DN621544; organism=Citrus sinensis; type=EST; length=681bp
CCAAAAATAATAATAAAATTTAAAAAATACAAACGTACTTGTGCACACTA
GGCCTCGTAAAAATATTAATTCAAAGTCATAATATGGCGCAAAATCAGAC
ATAAATCAAACCATTAATTCAGATTTTTCTGATTTTTAACGCTACTCTAA
CTTAAGCTGGAATATAATGCTCAATGAAGTCTAATAAAGCCATATCACAA
GTTGTGGCGATGCATGACCAATGGCAACGATGTTCATAGTGAGCGAGACA
ATCTGACAAACATTATCAAAGTGATCTTCATAAACTCTTCTAGCCCTCTT
CACTTGTAAAATTCGAAGTCGGTGTCGGGCTTCTTCACATTGGTCCGATA
ACCCTTTTCAAAGTCCTTGGGGAGTATGACATACCTGTTCTTGCGCACAG
CATGCATTCCTGCCTCTTGGCAGATGGCTGCAATCTCAGCAGCACTGATT
TTATCCGGACGGGAAACATAATCCTCCAAGTCTACCTCATCGCTTAAGTT
CATCTTTGCCGTGCAAACCTGAAAAACGAGCCTCTTTTGTCGTCTATCAG
GCAAAGGAAATTCAATTTTTCGGTCAAGCCTTCCAGGACGGAGAAGTGCA
GGGTCCAATGTGTCAGCCCGATTTGTTGCCATGATGACCTTAACATTTAC
AGTCTGATCAAATCCGTCCATCTGATTGAGG
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