DN621544

Overview
NameDN621544
Unique NameDN621544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 60/125 (48.00%), Postives = 80/125 (64.00%), Query Frame = -2
Query:  309 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY-RTNVKKPDTDFEF 680
            L +MDGFD   ++KVI ATNR D LDPALLRPGR DR I+ PLPD   +  +F++ T  MNL+++VDL+      +  S A+I AIC EAGM A+R++R ++   DF K   R   KK +   EF
Sbjct:  307 LAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIREDRDIVTMDDFLKAVDRVMGKKEEESGEF 431          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 54/108 (50.00%), Postives = 74/108 (68.52%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            LNQ+DGF+ T N+KVIMATNR D LDPALLRPGR+DRKIEFP P+   +  + ++ + KMNL+  ++L          S AE+  +C EAGM+A+R+ R  +  +DFE
Sbjct:  273 LNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 380          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 54/108 (50.00%), Postives = 74/108 (68.52%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            LNQ+DGF+ T N+KVIMATNR D LDPALLRPGR+DRKIEFP P+   +  + ++ + KMNL+  ++L          S AE+  +C EAGM+A+R+ R  +  +DFE
Sbjct:  276 LNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 383          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 55/117 (47.01%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  330 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 680
            LNQ+DGF+ T N+KV+M TNR D LDPALLRPGR+DRKIEFP P    +  + ++ + KMNL+  ++L+    + +  S AE+ A+C EAGM+A+R+ R  +  +DFE      +KK
Sbjct:  274 LNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQEDFEMAVSKVMKK 390          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQ+DGF    N+KVI ATNR D LDPALLR GRLDRKIEFPLP+   +  + Q+ + KMN+S +V+ ++     +  + A++ A+C EAGM A+R+    ++  DF +G    + K     E+Y
Sbjct:  296 LNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDFVEGCVEVMAKKKKTLEYY 420          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = -2
Query:  360 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 680
            +NQ+DGFD   N+KV+MATNR DTLDPALLRPGRLDRK+EF LPD   +  +F++ T  MN   ++  E         + A+I ++C EAGM+A+R  R  +  KDF
Sbjct:  295 VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDF 401          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = -2
Query:  360 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 680
            +NQ+DGFD   N+KV+MATNR DTLDPALLRPGRLDRK+EF LPD   +  +F++ T  MN   ++  E         + A+I ++C EAGM+A+R  R  +  KDF
Sbjct:  296 VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDF 402          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24
Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = -2
Query:  324 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPD 680
            LNQ+DGF+ T N+K+IMATNR D LDPALLRPGR+DRKIEFP P+   +  + ++ + +MNL+  ++L    S     S AEI A C EAGM A+R+ R  +  +D E      +K+ D
Sbjct:  285 LNQLDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFPNPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEAGMFALRERRVHVTQEDLEMAVAKVMKRGD 403          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 51/108 (47.22%), Postives = 75/108 (69.44%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            LNQ+DGF+ + N+K+IMATNR D LDPALLRPGR+DRKIEFP P    +  + ++ + KMNL+  ++L     + +  S A++  +C EAGM+A+R+ R  +  +DFE
Sbjct:  276 LNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFE 383          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = -2
Query:  318 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 680
            LNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  + ++ + KMNL   +DL+    + +  S AE+ A+C EAGM A+R+ R  +  +DFE      V K DT+
Sbjct:  290 LNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAV-AKVMKKDTE 409          
The following BLAST results are available for this feature:
BLAST of DN621544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
PSMR_METKA2.156e-2448.00Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PRS8_MANSE2.156e-2450.0026S protease regulatory subunit 8 OS=Manduca sexta... [more]
PRS8_DROME2.156e-2450.0026S protease regulatory subunit 8 OS=Drosophila me... [more]
PRS8_DICDI2.156e-2447.0126S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS6A_DICDI2.156e-2444.0026S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS7_PRUPE4.803e-2449.5326S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7A_ARATH4.803e-2449.5326S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS8_NAEFO6.273e-2447.0626S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS8_YEAST8.193e-2447.2226S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8B_ARATH8.193e-2446.2826S protease regulatory subunit 8 homolog B OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621544 ID=DN621544; Name=DN621544; organism=Citrus sinensis; type=EST; length=681bp
CCAAAAATAATAATAAAATTTAAAAAATACAAACGTACTTGTGCACACTA
GGCCTCGTAAAAATATTAATTCAAAGTCATAATATGGCGCAAAATCAGAC
ATAAATCAAACCATTAATTCAGATTTTTCTGATTTTTAACGCTACTCTAA
CTTAAGCTGGAATATAATGCTCAATGAAGTCTAATAAAGCCATATCACAA
GTTGTGGCGATGCATGACCAATGGCAACGATGTTCATAGTGAGCGAGACA
ATCTGACAAACATTATCAAAGTGATCTTCATAAACTCTTCTAGCCCTCTT
CACTTGTAAAATTCGAAGTCGGTGTCGGGCTTCTTCACATTGGTCCGATA
ACCCTTTTCAAAGTCCTTGGGGAGTATGACATACCTGTTCTTGCGCACAG
CATGCATTCCTGCCTCTTGGCAGATGGCTGCAATCTCAGCAGCACTGATT
TTATCCGGACGGGAAACATAATCCTCCAAGTCTACCTCATCGCTTAAGTT
CATCTTTGCCGTGCAAACCTGAAAAACGAGCCTCTTTTGTCGTCTATCAG
GCAAAGGAAATTCAATTTTTCGGTCAAGCCTTCCAGGACGGAGAAGTGCA
GGGTCCAATGTGTCAGCCCGATTTGTTGCCATGATGACCTTAACATTTAC
AGTCTGATCAAATCCGTCCATCTGATTGAGG
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