DN621544

Overview
NameDN621544
Unique NameDN621544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = -2
Query:  318 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 680
            LNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  + ++ + KMNL   +DL+    + +  S AE+ A+C EAGM A+R+ R  +  +DFE      V K DT+
Sbjct:  290 LNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAV-AKVMKKDTE 409          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = -2
Query:  360 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 680
            +NQ+DGFD   N+KV+MATNR DTLDPALLRPGRLDRK+EF LPD   +  +F++ T  MN   ++  E         + A+I ++C EAGM+A+R  R  +  KDF
Sbjct:  296 VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDF 402          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = -2
Query:  360 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 680
            +NQ+DGFD   N+KV+MATNR DTLDPALLRPGRLDRK+EF LPD   +  +F++ T  MN   ++  E         + A+I ++C EAGM+A+R  R  +  KDF
Sbjct:  296 VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDF 402          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 59/128 (46.09%), Postives = 77/128 (60.16%), Query Frame = -2
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEFYK 680
            LNQMDGFD    VK+IMATNR D LDPALLRPGRLDRKIE PLP+   +  V ++  A +    +VD E      D  +AA++  +C EAGM A+R  R  ++ +DF K  R     KK +   ++ K
Sbjct:  265 LNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRKCQEAKKLEGKLDYQK 392          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 110.153 bits (274), Expect = 1.070e-23
Identity = 61/128 (47.66%), Postives = 76/128 (59.38%), Query Frame = -2
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEFYK 680
            L QMDGFD     K+IMATNR DTLDPALLRPGRLDRK+E PLP+   +  +F++ TAK+  + E D E  V   D  + A+I     EAG  A+R +R  I P D  K  R    VKK +   E+ K
Sbjct:  309 LTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKKLEGTIEYQK 436          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23
Identity = 54/125 (43.20%), Postives = 78/125 (62.40%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQ+DGF  T  VKVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q+ + KMN+S +V+ E+     D  + A+  A+C EAG+ A+R+    +  +D+ +G      K   + ++Y
Sbjct:  279 LNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGIIALRRGATELTHEDYMEGILEVQAKKKANLQYY 403          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            LNQ+DGF+ T N+KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + ++ + KMNL+  ++L          S AE+  +C EAGM+A+R+ R  +  +DFE
Sbjct:  271 LNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 378          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            LNQ+DGF+ T N+KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + ++ + KMNL+  ++L          S AE+  +C EAGM+A+R+ R  +  +DFE
Sbjct:  277 LNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 384          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            LNQ+DGF+ T N+KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + ++ + KMNL+  ++L          S AE+  +C EAGM+A+R+ R  +  +DFE
Sbjct:  277 LNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 384          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            LNQ+DGF+ T N+KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + ++ + KMNL+  ++L          S AE+  +C EAGM+A+R+ R  +  +DFE
Sbjct:  277 LNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 384          
The following BLAST results are available for this feature:
BLAST of DN621544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
PRS8A_ARATH8.193e-2446.2826S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS7_SPIOL8.193e-2449.5326S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_ORYSJ8.193e-2449.5326S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS10_DICDI8.193e-2446.0926S protease regulatory subunit S10B OS=Dictyostel... [more]
PRS10_YEAST1.070e-2347.6626S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PR6AB_XENLA1.397e-2343.2026S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PRS8_XENLA1.825e-2349.0726S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS8_RAT1.825e-2349.0726S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG1.825e-2349.0726S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE1.825e-2349.0726S protease regulatory subunit 8 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621544 ID=DN621544; Name=DN621544; organism=Citrus sinensis; type=EST; length=681bp
CCAAAAATAATAATAAAATTTAAAAAATACAAACGTACTTGTGCACACTA
GGCCTCGTAAAAATATTAATTCAAAGTCATAATATGGCGCAAAATCAGAC
ATAAATCAAACCATTAATTCAGATTTTTCTGATTTTTAACGCTACTCTAA
CTTAAGCTGGAATATAATGCTCAATGAAGTCTAATAAAGCCATATCACAA
GTTGTGGCGATGCATGACCAATGGCAACGATGTTCATAGTGAGCGAGACA
ATCTGACAAACATTATCAAAGTGATCTTCATAAACTCTTCTAGCCCTCTT
CACTTGTAAAATTCGAAGTCGGTGTCGGGCTTCTTCACATTGGTCCGATA
ACCCTTTTCAAAGTCCTTGGGGAGTATGACATACCTGTTCTTGCGCACAG
CATGCATTCCTGCCTCTTGGCAGATGGCTGCAATCTCAGCAGCACTGATT
TTATCCGGACGGGAAACATAATCCTCCAAGTCTACCTCATCGCTTAAGTT
CATCTTTGCCGTGCAAACCTGAAAAACGAGCCTCTTTTGTCGTCTATCAG
GCAAAGGAAATTCAATTTTTCGGTCAAGCCTTCCAGGACGGAGAAGTGCA
GGGTCCAATGTGTCAGCCCGATTTGTTGCCATGATGACCTTAACATTTAC
AGTCTGATCAAATCCGTCCATCTGATTGAGG
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