DN621544

Overview
NameDN621544
Unique NameDN621544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            LNQ+DGF+ T N+KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + ++ + KMNL+  ++L          S AE+  +C EAGM+A+R+ R  +  +DFE
Sbjct:  277 LNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 384          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            LNQ+DGF+ T N+KVIMATNR D LD ALLRPGR+DRKIEFP P+   +  + ++ + KMNL+  ++L          S AE+  +C EAGM+A+R+ R  +  +DFE
Sbjct:  277 LNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 384          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 54/125 (43.20%), Postives = 77/125 (61.60%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQ+DGF     VKVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q+ + KMN+S +V+ E+     D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:  314 LNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYY 438          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 53/125 (42.40%), Postives = 77/125 (61.60%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIEFP P    +  + Q+ + KMN++ +V+ E+     D  + A++ A+C EAGM A+R++   +  +DF +G      K  +   +Y
Sbjct:  304 LNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYY 428          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.825e-23
Identity = 54/125 (43.20%), Postives = 77/125 (61.60%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQ+DGF     VKVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q+ + KMN+S +V+ E+     D  + A+  A+C EAGM A+R+    +  +D+ +G      K   + ++Y
Sbjct:  314 LNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYY 438          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23
Identity = 54/112 (48.21%), Postives = 73/112 (65.18%), Query Frame = -2
Query:  345 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 680
            LNQ+DGFDQ   VK+IMATNR D LDPALLRPGRLDRKIE PLP+ + +  + ++  + +    E+D E  V   +  + A++  IC EAGM A+R  R  ++ +DF K  R
Sbjct:  267 LNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVR 378          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.066e-23
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = -2
Query:  333 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 680
            +NQ+DGFD   N+KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F++    M++  ++  E         + AEI ++C EAGM A+R  R V   KDF +     +K
Sbjct:  303 INQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVNKVIK 418          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.066e-23
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIEFP P    +  + Q+ + KMN++ +V+ E+     D  + A++ A+C EAGM A+R++   +  +DF +G      K      +Y
Sbjct:  298 LNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKASLNYY 422          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.310e-23
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = -2
Query:  345 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 680
            LNQ+DGFD    VK+IMATNR D LDPALLRPGRLDRKIE PLP+ + +  + ++  A +    E+D E  V   +  + A++  IC EAGM A+R  R  ++ +DF K  R
Sbjct:  267 LNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVR 378          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.310e-23
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = -2
Query:  333 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 680
            +NQ+DGFD   N+KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F++    M++  ++  E         + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:  303 INQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
The following BLAST results are available for this feature:
BLAST of DN621544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
PRS8_HUMAN1.825e-2349.0726S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN1.825e-2349.0726S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS6A_RAT1.825e-2343.2026S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_ORYSJ1.825e-2342.4026S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS6A_HUMAN1.825e-2343.2026S protease regulatory subunit 6A OS=Homo sapiens... [more]
PS10B_ARATH3.113e-2348.2126S protease regulatory subunit S10B homolog B OS=... [more]
PRS7_XENLA4.066e-2346.5526S protease regulatory subunit 7 OS=Xenopus laevi... [more]
PRS6A_SOLLC4.066e-2342.4026S protease regulatory subunit 6A homolog OS=Sola... [more]
PS10A_ARATH5.310e-2348.2126S protease regulatory subunit 10B homolog A OS=A... [more]
PRS7_RAT5.310e-2345.6926S protease regulatory subunit 7 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621544 ID=DN621544; Name=DN621544; organism=Citrus sinensis; type=EST; length=681bp
CCAAAAATAATAATAAAATTTAAAAAATACAAACGTACTTGTGCACACTA
GGCCTCGTAAAAATATTAATTCAAAGTCATAATATGGCGCAAAATCAGAC
ATAAATCAAACCATTAATTCAGATTTTTCTGATTTTTAACGCTACTCTAA
CTTAAGCTGGAATATAATGCTCAATGAAGTCTAATAAAGCCATATCACAA
GTTGTGGCGATGCATGACCAATGGCAACGATGTTCATAGTGAGCGAGACA
ATCTGACAAACATTATCAAAGTGATCTTCATAAACTCTTCTAGCCCTCTT
CACTTGTAAAATTCGAAGTCGGTGTCGGGCTTCTTCACATTGGTCCGATA
ACCCTTTTCAAAGTCCTTGGGGAGTATGACATACCTGTTCTTGCGCACAG
CATGCATTCCTGCCTCTTGGCAGATGGCTGCAATCTCAGCAGCACTGATT
TTATCCGGACGGGAAACATAATCCTCCAAGTCTACCTCATCGCTTAAGTT
CATCTTTGCCGTGCAAACCTGAAAAACGAGCCTCTTTTGTCGTCTATCAG
GCAAAGGAAATTCAATTTTTCGGTCAAGCCTTCCAGGACGGAGAAGTGCA
GGGTCCAATGTGTCAGCCCGATTTGTTGCCATGATGACCTTAACATTTAC
AGTCTGATCAAATCCGTCCATCTGATTGAGG
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