DN621544

Overview
NameDN621544
Unique NameDN621544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 107.842 bits (268), Expect = 5.310e-23
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = -2
Query:  333 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 680
            +NQ+DGFD   N+KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F++    M++  ++  E         + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:  303 INQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.310e-23
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = -2
Query:  333 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 680
            +NQ+DGFD   N+KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F++    M++  ++  E         + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:  303 INQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.310e-23
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = -2
Query:  333 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 680
            +NQ+DGFD   N+KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F++    M++  ++  E         + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:  303 INQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.310e-23
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = -2
Query:  333 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 680
            +NQ+DGFD   N+KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  +F++    M++  ++  E         + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:  303 INQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.936e-23
Identity = 54/117 (46.15%), Postives = 76/117 (64.96%), Query Frame = -2
Query:  330 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 680
            L +MDGFD   +VK+I ATNR D LDPA+LRPGR DR IE P PD + +  + ++ T KMNL+++V+LE+     +    AE+ AIC EAGM+A+R+ R  +   DF K     ++K
Sbjct:  298 LAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 414          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.936e-23
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQ+DGF     VKVI ATNR D LDPALLR GRLDRKIEFP+P+   +  + Q+ + KMN+S +V+ E+     D  + A+  A+C EAGM A+R+    +  +D  +G      K   + ++Y
Sbjct:  317 LNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQSKAVCVEAGMIALRRGATELTHEDHMEGILEVQAKKKANLQYY 441          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.058e-23
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIEFP P    +  + Q+ + KMN+  +V+ E+     D  + A++ A+C EAGM A+R++   +  +DF +G      K      +Y
Sbjct:  299 LNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 423          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.058e-23
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = -2
Query:  351 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKG 680
            LNQ+DGF  +  VK+I ATNR D LDPALLR GRLDRKIEFPLP+   ++ + Q+   KM++ D+V+ ++     +  + A+  A+C EAGM A+RK +  I   DF  G
Sbjct:  276 LNQLDGFSSSEEVKIIAATNRVDILDPALLRSGRLDRKIEFPLPNTLGRKRILQIHARKMSVRDDVNFDELARSTEGFNGAQCKAVCVEAGMAALRKEKTEISQNDFMDG 385          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.058e-23
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIEFP P    +  + Q+ + KMN+  +V+ E+     D  + A++ A+C EAGM A+R++   +  +DF +G      K      +Y
Sbjct:  299 LNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 423          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.183e-22
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQ+DGF     +KVI ATNRAD LDPAL+R GRLDRKIEFP P    +  + Q+ + KMN++ +V+ E+     D  + A++ A+C EAGM A+R++   +  +DF +G      K      +Y
Sbjct:  298 LNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 422          
The following BLAST results are available for this feature:
BLAST of DN621544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
PRS7_MOUSE5.310e-2345.6926S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA5.310e-2345.6926S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN5.310e-2345.6926S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN5.310e-2345.6926S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PSMR_METJA6.936e-2346.15Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PRS6A_MOUSE6.936e-2343.2026S protease regulatory subunit 6A OS=Mus musculus... [more]
PS6AA_ARATH9.058e-2342.4026S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_ENCCU9.058e-2347.2726S protease regulatory subunit 6A OS=Encephalitoz... [more]
PRS6A_BRACM9.058e-2342.4026S protease regulatory subunit 6A homolog OS=Bras... [more]
PS6AB_ARATH1.183e-2242.4026S protease regulatory subunit 6A homolog B OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621544 ID=DN621544; Name=DN621544; organism=Citrus sinensis; type=EST; length=681bp
CCAAAAATAATAATAAAATTTAAAAAATACAAACGTACTTGTGCACACTA
GGCCTCGTAAAAATATTAATTCAAAGTCATAATATGGCGCAAAATCAGAC
ATAAATCAAACCATTAATTCAGATTTTTCTGATTTTTAACGCTACTCTAA
CTTAAGCTGGAATATAATGCTCAATGAAGTCTAATAAAGCCATATCACAA
GTTGTGGCGATGCATGACCAATGGCAACGATGTTCATAGTGAGCGAGACA
ATCTGACAAACATTATCAAAGTGATCTTCATAAACTCTTCTAGCCCTCTT
CACTTGTAAAATTCGAAGTCGGTGTCGGGCTTCTTCACATTGGTCCGATA
ACCCTTTTCAAAGTCCTTGGGGAGTATGACATACCTGTTCTTGCGCACAG
CATGCATTCCTGCCTCTTGGCAGATGGCTGCAATCTCAGCAGCACTGATT
TTATCCGGACGGGAAACATAATCCTCCAAGTCTACCTCATCGCTTAAGTT
CATCTTTGCCGTGCAAACCTGAAAAACGAGCCTCTTTTGTCGTCTATCAG
GCAAAGGAAATTCAATTTTTCGGTCAAGCCTTCCAGGACGGAGAAGTGCA
GGGTCCAATGTGTCAGCCCGATTTGTTGCCATGATGACCTTAACATTTAC
AGTCTGATCAAATCCGTCCATCTGATTGAGG
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