DN621544

Overview
NameDN621544
Unique NameDN621544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.545e-22
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = -2
Query:  360 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 680
            +NQ+DGFD   N+KV+MATNR DTLDPALLRPGRLDRK+EF LPD   +  +F +    M+ + ++  E         + A+I ++C EAGM A+R  R V+  KDF
Sbjct:  298 INQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDF 404          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.018e-22
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = -2
Query:  360 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 680
            L +MDGFD   NV+++ ATNR D LDPALLRPGR DR I+ P+P    +  + ++   KMNL+D+VDL       D+ S A+++AI  EAGM A+R NR V+   DF
Sbjct:  287 LAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEAGMFAIRNNRDVVDSSDF 393          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.635e-22
Identity = 52/116 (44.83%), Postives = 72/116 (62.07%), Query Frame = -2
Query:  333 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 680
            +NQ+DGFD   N+KV+MATNR DTLDPAL+RPGRLDRKIEF LPD   +  + ++    M++  ++  E         + AEI ++C EAGM A+R  R +   KDF +     +K
Sbjct:  303 INQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.495e-22
Identity = 55/117 (47.01%), Postives = 74/117 (63.25%), Query Frame = -2
Query:  330 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 680
            L ++DGFD   +VKVI ATNR D LDPA+LRPGR DR IE PLP    +  +F++ T KM L+++VD ++     +  S A+I AIC EAGM A+R+ R  +   DF K     +KK
Sbjct:  269 LAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIREERAKVTMLDFTKAIEKVLKK 385          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.871e-22
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = -2
Query:  333 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 680
            +NQ+DGFD   N+KV+MATNR DTLDPAL+RPGRLDRK+EF LPD   +  + ++   +M++  ++  +         + AEI ++C EAGM A+R  R V   KDF +     VK
Sbjct:  305 INQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKVVK 420          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.871e-22
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  345 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 680
            LNQMDGFD    VK+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + ++    +    E+D E  V   D  + A++  +C EAGM A+R +   ++ +DF K  R
Sbjct:  261 LNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVR 372          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  345 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 680
            LNQMDGFD    VK+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + ++    +    E+D E  V   D  + A++  +C EAGM A+R +   ++ +DF K  R
Sbjct:  261 LNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVR 372          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  345 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 680
            LNQMDGFD    VK+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + ++    +    E+D E  V   D  + A++  +C EAGM A+R +   ++ +DF K  R
Sbjct:  261 LNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVR 372          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  345 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 680
            LNQMDGFD    VK+IMATNR DTLDPALLRPGRLDRKI   LP+ + +  + ++    +    E+D E  V   D  + A++  +C EAGM A+R +   ++ +DF K  R
Sbjct:  261 LNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVR 372          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.708e-21
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = -2
Query:  306 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFY 680
            LNQ+DGF     VKV+ ATNR D LDPALLR GRLDRKIEFPLP    +  + Q+ + KM   D+++ ++     D+ + A++ A+  EAGM A+R  +  +  +DF +G      +      FY
Sbjct:  309 LNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSKSVSFY 433          
The following BLAST results are available for this feature:
BLAST of DN621544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
PRS7_DICDI1.545e-2248.6026S protease regulatory subunit 7 OS=Dictyostelium... [more]
PSMR_UNCMA2.018e-2248.60Proteasome-activating nucleotidase OS=Uncultured m... [more]
PRS7_PONAB2.635e-2244.8326S protease regulatory subunit 7 OS=Pongo abelii ... [more]
PSMR_ARCFU4.495e-2247.01Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PRS7_CAEEL5.871e-2244.8326S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS10_BOVIN5.871e-2246.4326S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS10_SPETR7.668e-2246.4326S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE7.668e-2246.4326S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN7.668e-2246.4326S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS6A_YEAST1.708e-2140.8026S protease regulatory subunit 6A OS=Saccharomyce... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621544 ID=DN621544; Name=DN621544; organism=Citrus sinensis; type=EST; length=681bp
CCAAAAATAATAATAAAATTTAAAAAATACAAACGTACTTGTGCACACTA
GGCCTCGTAAAAATATTAATTCAAAGTCATAATATGGCGCAAAATCAGAC
ATAAATCAAACCATTAATTCAGATTTTTCTGATTTTTAACGCTACTCTAA
CTTAAGCTGGAATATAATGCTCAATGAAGTCTAATAAAGCCATATCACAA
GTTGTGGCGATGCATGACCAATGGCAACGATGTTCATAGTGAGCGAGACA
ATCTGACAAACATTATCAAAGTGATCTTCATAAACTCTTCTAGCCCTCTT
CACTTGTAAAATTCGAAGTCGGTGTCGGGCTTCTTCACATTGGTCCGATA
ACCCTTTTCAAAGTCCTTGGGGAGTATGACATACCTGTTCTTGCGCACAG
CATGCATTCCTGCCTCTTGGCAGATGGCTGCAATCTCAGCAGCACTGATT
TTATCCGGACGGGAAACATAATCCTCCAAGTCTACCTCATCGCTTAAGTT
CATCTTTGCCGTGCAAACCTGAAAAACGAGCCTCTTTTGTCGTCTATCAG
GCAAAGGAAATTCAATTTTTCGGTCAAGCCTTCCAGGACGGAGAAGTGCA
GGGTCCAATGTGTCAGCCCGATTTGTTGCCATGATGACCTTAACATTTAC
AGTCTGATCAAATCCGTCCATCTGATTGAGG
back to top