DN621544

Overview
NameDN621544
Unique NameDN621544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.806e-21
Identity = 58/109 (53.21%), Postives = 69/109 (63.30%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGFD   NVKVI ATNR D LDPALLRPGR DR IE PLPD R +  + +V T KMNL + VDL       +  S A++ AI  EAGM A+R  R  +  +DF K
Sbjct:  266 LAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNLRN-VDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDFLK 373          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.970e-21
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGFD   +VK+I ATNR D LDPA+LRPGR DR IE   PD   +  +F++ T KMN+   VDL +     + +  A+I A+C EAGM A+R+ R  +  KDF++
Sbjct:  276 LAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNIK-SVDLREIAKMAENMVGADIKAVCTEAGMFAIREGREYVTTKDFKE 383          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.970e-21
Identity = 48/121 (39.67%), Postives = 77/121 (63.64%), Query Frame = -2
Query:  318 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTD 680
            L++MDGFD+  ++++I ATNR D LD A+LRPGR DR IE P P+   +  + ++   +MN++D VD  D  +   + S A++A++  EAGM A+R +R  +  +DF+  Y   V + DT+
Sbjct:  280 LSEMDGFDERGDIRIIAATNRFDMLDSAILRPGRFDRLIEVPNPNPDARERILEIHAGEMNVADSVDFSDLAADTAEFSGAQLASLATEAGMFAIRDDRDEVHRQDFDDAYEKLVAEGDTE 400          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.491e-21
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = -2
Query:  303 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR--TNVKKPDTDFEFYK 680
            LNQMDGFD     K+IMATNR DTLDPALLRPGRLDRKIE PLP+   +  + ++   K++   E+D E  V   D  + A++  +  EAG  A++++R  ++  D     R   ++KK +   ++ K
Sbjct:  260 LNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGTIDYQK 387          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.107e-20
Identity = 52/123 (42.28%), Postives = 76/123 (61.79%), Query Frame = -2
Query:  312 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFE 680
            L +MDGF    +V++I ATNR D LD ALLRPGR DR IE P PD   +  +  +  A MN+  +VD+ D  +R D  + A++ +IC EAGM A+R +  ++  +DFE+    +++K   DFE
Sbjct:  281 LAEMDGFSNRGDVRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGADLRSICMEAGMFAIRSDHEMVTLEDFEQ----SIEKFSNDFE 399          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.107e-20
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGFD   +VK++ ATNR D LD ALLRPGR DR IE PLPD + +  + ++ T  MN+ ++V+L +     +  + A++ AIC EAGM A+R  R  +  +DF K
Sbjct:  281 LAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSRLTEGKNGADLRAICMEAGMFAIRMERDAVNSEDFMK 389          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.107e-20
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  360 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 680
            L Q+DGFD   N+KV+MATNR D LDPALLRPGRLDRK+EF LPD   +  +F++ T  M+   ++  E         + A+I ++C EAGM+A+   R  +  KDF
Sbjct:  333 LYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDF 439          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.446e-20
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = -2
Query:  360 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 680
            L ++DGF+   NV ++ ATNR D LDPALLRPGR DR IE PLP+   +R + ++ T+ M L++EVD+E      D  S A++ AIC EAGM A+R  R  +   DF
Sbjct:  279 LAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADF 385          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 57/109 (52.29%), Postives = 67/109 (61.47%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGFD   NVKVI ATNR D LDPALLRPGR DR IE PLPD + +  + +V T KMNL   VDL       +  S A++ AI  EAGM A+R  R  +   DF K
Sbjct:  266 LAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNLKG-VDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDFLK 373          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 57/123 (46.34%), Postives = 75/123 (60.98%), Query Frame = -2
Query:  312 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFE 680
            L  MDGF+   +VK+I ATNR D LD ALLRPGR DR IE PLPD   +  + +V T  MNLS++VDL +     +  + AE+ AIC EAGM A+RK      P+  ++ + T + K   DFE
Sbjct:  281 LAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEH----PQVDQEDFLTALNKFRCDFE 399          
The following BLAST results are available for this feature:
BLAST of DN621544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
PSMR_THEGJ3.806e-2153.21Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_METVS4.970e-2146.79Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR1_HALSA4.970e-2139.67Proteasome-activating nucleotidase 1 OS=Halobacter... [more]
PRS10_SCHPO6.491e-2141.41Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PSMR_METPE1.107e-2042.28Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_METMJ1.107e-2044.95Proteasome-activating nucleotidase OS=Methanoculle... [more]
PRS7B_ARATH1.107e-2046.7326S protease regulatory subunit 7 homolog B OS=Ara... [more]
PSMR_METTH1.446e-2047.66Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_PYRKO1.889e-2052.29Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_METHJ1.889e-2046.34Proteasome-activating nucleotidase OS=Methanospiri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621544 ID=DN621544; Name=DN621544; organism=Citrus sinensis; type=EST; length=681bp
CCAAAAATAATAATAAAATTTAAAAAATACAAACGTACTTGTGCACACTA
GGCCTCGTAAAAATATTAATTCAAAGTCATAATATGGCGCAAAATCAGAC
ATAAATCAAACCATTAATTCAGATTTTTCTGATTTTTAACGCTACTCTAA
CTTAAGCTGGAATATAATGCTCAATGAAGTCTAATAAAGCCATATCACAA
GTTGTGGCGATGCATGACCAATGGCAACGATGTTCATAGTGAGCGAGACA
ATCTGACAAACATTATCAAAGTGATCTTCATAAACTCTTCTAGCCCTCTT
CACTTGTAAAATTCGAAGTCGGTGTCGGGCTTCTTCACATTGGTCCGATA
ACCCTTTTCAAAGTCCTTGGGGAGTATGACATACCTGTTCTTGCGCACAG
CATGCATTCCTGCCTCTTGGCAGATGGCTGCAATCTCAGCAGCACTGATT
TTATCCGGACGGGAAACATAATCCTCCAAGTCTACCTCATCGCTTAAGTT
CATCTTTGCCGTGCAAACCTGAAAAACGAGCCTCTTTTGTCGTCTATCAG
GCAAAGGAAATTCAATTTTTCGGTCAAGCCTTCCAGGACGGAGAAGTGCA
GGGTCCAATGTGTCAGCCCGATTTGTTGCCATGATGACCTTAACATTTAC
AGTCTGATCAAATCCGTCCATCTGATTGAGG
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