DN621544

Overview
NameDN621544
Unique NameDN621544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = -2
Query:  351 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKG 680
            LNQ+DGF     VKVI ATNR DTLDPALLR GRLDRK+EFPLP+   +  + ++ + KM + D+++ E+     D+ + A + ++C EAGM A+R+    I  + F  G
Sbjct:  313 LNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFMDG 422          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            L++MDGFD+  ++++I ATNR D LD A+LRPGR DR IE P P+   +  +F++ T  MN++D VD  +  +    +S A++ AIC EAGM A+R +R  +  +DF+
Sbjct:  277 LSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVADSVDFGELAADTGDLSGADVKAICTEAGMFAIRDDRTEVRMQDFQ 384          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGFD + NVK+I ATNR D LDPALLRPGR DR IE PLP+ + +  + ++ T +MNL   VDL       +  S A++ AI  EAGM A+R  R  +  +DF K
Sbjct:  267 LAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKSRLEILKIHTKRMNLKG-VDLRIIAEMTEGASGADLKAITMEAGMFAIRDRREYVTQEDFLK 374          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            + Q+DGFD   N+KV+ ATNR +TLDPALLRPGR+DRK+EF LPD   +  +F++ +  M++   +  E         + AE+ ++C EAGM A+R  R V   KDF K
Sbjct:  337 ITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLK 445          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.495e-20
Identity = 55/109 (50.46%), Postives = 67/109 (61.47%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGFD   NVKVI ATNR D LDPALLRPGR DR IE PLPD   +  + +V T +M L   VDL       +  S A++ AI  EAGM A+R+ R  +  +DF K
Sbjct:  268 LAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKLKG-VDLRAIAEMTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLK 375          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.495e-20
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGFD   +VK+I ATNR D LDPA+LRPGR DR IE  +PD   +  + ++ T KMNL + VDL +     + +  A++ A+C EAGM A+R+ R  I   DF++
Sbjct:  276 LAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLKN-VDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDFKE 383          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 55/109 (50.46%), Postives = 68/109 (62.39%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGFD   NVKVI ATNR D LDPALLRPGR DR IE PLPD   +  + +V T +M L + VDL       +  S A++ AI  EAGM A+R+ R  +  +DF K
Sbjct:  268 LAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKLKN-VDLRVIAEITEGASGADLKAIATEAGMFAIRERRTYVTQEDFLK 375          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGFD   +VK+I ATNR D LDPA+LRPGR DR IE  +PD   +  + ++ T KMNL   VDL +     + +  A++ A+C EAGM A+R+ R  I   DF++
Sbjct:  276 LAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNLKG-VDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDFKE 383          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 55/109 (50.46%), Postives = 67/109 (61.47%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGFD   NVKVI ATNR D LDPALLRPGR DR IE PLPD   +  + +V T +M L   VDL       +  S A++ AI  EAGM A+R+ R  +  +DF K
Sbjct:  265 LAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKLRG-VDLRLIAELTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLK 372          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGFD   +VK+I ATNR D LDPA+LRPGR DR IE  +PD   +  + ++ T KMNL   VDL +     + +  A++ A+C EAGM A+R+ R  I   DF +
Sbjct:  276 LAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLKG-VDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFRE 383          
The following BLAST results are available for this feature:
BLAST of DN621544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
PRS6A_SCHPO1.889e-2045.4526S protease regulatory subunit 6A OS=Schizosaccha... [more]
PSMR2_HALSA2.467e-2043.52Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PSMR_THEON3.222e-2048.62Proteasome-activating nucleotidase OS=Thermococcus... [more]
PRS7_YEAST4.208e-2044.9526S protease regulatory subunit 7 homolog OS=Sacch... [more]
PSMR_PYRHO5.495e-2050.46Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_METM75.495e-2045.87Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_PYRAB7.177e-2050.46Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_METM61.224e-1945.87Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_PYRFU1.599e-1950.46Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_METMP1.599e-1945.87Proteasome-activating nucleotidase OS=Methanococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621544 ID=DN621544; Name=DN621544; organism=Citrus sinensis; type=EST; length=681bp
CCAAAAATAATAATAAAATTTAAAAAATACAAACGTACTTGTGCACACTA
GGCCTCGTAAAAATATTAATTCAAAGTCATAATATGGCGCAAAATCAGAC
ATAAATCAAACCATTAATTCAGATTTTTCTGATTTTTAACGCTACTCTAA
CTTAAGCTGGAATATAATGCTCAATGAAGTCTAATAAAGCCATATCACAA
GTTGTGGCGATGCATGACCAATGGCAACGATGTTCATAGTGAGCGAGACA
ATCTGACAAACATTATCAAAGTGATCTTCATAAACTCTTCTAGCCCTCTT
CACTTGTAAAATTCGAAGTCGGTGTCGGGCTTCTTCACATTGGTCCGATA
ACCCTTTTCAAAGTCCTTGGGGAGTATGACATACCTGTTCTTGCGCACAG
CATGCATTCCTGCCTCTTGGCAGATGGCTGCAATCTCAGCAGCACTGATT
TTATCCGGACGGGAAACATAATCCTCCAAGTCTACCTCATCGCTTAAGTT
CATCTTTGCCGTGCAAACCTGAAAAACGAGCCTCTTTTGTCGTCTATCAG
GCAAAGGAAATTCAATTTTTCGGTCAAGCCTTCCAGGACGGAGAAGTGCA
GGGTCCAATGTGTCAGCCCGATTTGTTGCCATGATGACCTTAACATTTAC
AGTCTGATCAAATCCGTCCATCTGATTGAGG
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