DN621543

Overview
NameDN621543
Unique NameDN621543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF1_DROME (V-type proton ATPase subunit F 1 OS=Drosophila melanogaster GN=Vha14 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.537e-26
Identity = 51/104 (49.04%), Postives = 74/104 (71.15%), Query Frame = -1
Query:  216 DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 527
            DT VGFLL GVG ++  R  N+++VD  T + ++ED FK F  R+DI I+LI+Q  A  IR ++D+H  P+PA+LEIPSKDHPYD ++DS+L R + + + E +
Sbjct:   19 DTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSELEDCFKRFLKRDDIDIILINQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPEDL 122          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF1_DROPS (V-type proton ATPase subunit F 1 OS=Drosophila pseudoobscura pseudoobscura GN=Vha14 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.314e-26
Identity = 51/104 (49.04%), Postives = 74/104 (71.15%), Query Frame = -1
Query:  216 DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 527
            DT VGFLL GVG ++  R  N+++VD  T + ++ED FK F  R+DI I+LI+Q  A  IR ++D+H  P+PA+LEIPSKDHPYD ++DS+L R + + + E +
Sbjct:   19 DTCVGFLLGGVGEINKNRHPNFMVVDKNTPVSELEDCFKRFLKRDDIDIILINQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPEDL 122          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_NEUCR (V-type proton ATPase subunit F OS=Neurospora crassa GN=vma-7 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = -1
Query:  234 DTVVGFLLAGVGNVDLR--RKTNYLIVDSKTTIKQIEDAFKEFTS-REDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 527
            D+V G LLAG+G+V      + N+L+VD+KT    IE AF  FT+ R+DI IVLI+Q++A+RIR  VD+H    P +LEIPSKDHPYDP +DSVL RV+ L
Sbjct:   21 DSVTGLLLAGIGHVTAPPDSQKNFLVVDNKTDNAAIEAAFDRFTTERKDIGIVLINQHIADRIRHRVDTHTAAFPTVLEIPSKDHPYDPEKDSVLRRVRRL 121          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_SCHPO (V-type proton ATPase subunit F OS=Schizosaccharomyces pombe GN=vma7 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = -1
Query:  231 DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTS-REDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 527
            DTV G LLAG G V+     N+ I+  KTT +QI +AF ++T+ R+DIAIVLI+Q+ A RIR  +++H +  PA+LEIPSKD PYDP +DS+L RV+ ++
Sbjct:   19 DTVTGMLLAGTGQVNENGDKNFFIITQKTTDEQIAEAFDDYTTKRKDIAIVLINQFAAERIRDRIENHVQAFPAVLEIPSKDDPYDPEKDSILRRVRKII 118          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF_YEAST (V-type proton ATPase subunit F OS=Saccharomyces cerevisiae GN=VMA7 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.210e-21
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = -1
Query:  234 DTVVGFLLAGVGNV--DLRRKTNYLIVDSKTTIKQIEDAFKEFTS-REDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 527
            DT  G LLAG+G +  + + K  ++  + KTT ++I D F  FT  R+DIAI+LI+Q++A  IR  VDS     PAILEIPSKDHPYDP +DSVL RV+ L
Sbjct:   15 DTTTGLLLAGIGQITPETQEKNFFVYQEGKTTKEEITDKFNHFTEERDDIAILLINQHIAENIRARVDSFTNAFPAILEIPSKDHPYDPEKDSVLKRVRKL 115          
BLAST of DN621543 vs. ExPASy Swiss-Prot
Match: VATF2_DROME (Probable V-type proton ATPase subunit F 2 OS=Drosophila melanogaster GN=CG1076 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 38/72 (52.78%), Postives = 53/72 (73.61%), Query Frame = -1
Query:  228 TTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVS 443
            TT KQIE+ FK+F  R DI I+LI+Q  A+ IR  VD+HN  +P +LEIPSK HPYD ++DS+L R + +++
Sbjct:   52 TTPKQIEECFKKFLRRPDIVIILINQVYADMIRPTVDAHNLAVPTVLEIPSKQHPYDSSRDSILKRAQRVIT 123          
The following BLAST results are available for this feature:
BLAST of DN621543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
VATF1_DROME2.537e-2649.04V-type proton ATPase subunit F 1 OS=Drosophila mel... [more]
VATF1_DROPS3.314e-2649.04V-type proton ATPase subunit F 1 OS=Drosophila pse... [more]
VATF_NEUCR9.978e-2355.45V-type proton ATPase subunit F OS=Neurospora crass... [more]
VATF_SCHPO1.303e-2252.00V-type proton ATPase subunit F OS=Schizosaccharomy... [more]
VATF_YEAST3.210e-2152.48V-type proton ATPase subunit F OS=Saccharomyces ce... [more]
VATF2_DROME9.046e-1652.78Probable V-type proton ATPase subunit F 2 OS=Droso... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621543 ID=DN621543; Name=DN621543; organism=Citrus sinensis; type=EST; length=719bp
CACCGGTGTATTATGCACACAAATACATACATATAAAACACAACTTGTAT
CCAAACTAATATTTCTTCACCAGAGTTCATGAATAGTTGGTAGAAAAATT
ACCCAAGTACAAATATAGGAAGAATCATATATGTAACTATATAAATATGC
AGTCGAGGGAAAGGAGATTAAACAGAGACACCACTGTATATCTAAGCTCA
GCGCCTGTCAGATGCCACAGATTCTACAGAGACGAGGTTCTTCACTCGTG
AAAGAACTGAATCTTGTGCAGGATCATACGGATGATCCTTGGAAGGTATC
TCCAAAATTGCAGGGATCGGCTTGTTATGGCTATCAACCAAAAACCTTAT
CCTGTTTGCAACATATTGGCTAATTAGAACTATTGCGATATCCTCCCTGG
ATGTGAACTCTTTAAATGCATCTTCAATTTGCTTTATAGTTGTTTTTGAG
TCCACAATAAGGTAATTTGTCTTCCTCCGCAAGTCAACATTCCCAACTCC
AGCAAGCAAAAATCCAACTACAGTGTCCCAACAGTGGACTTGCATCAGGA
GATGATCAAACATGTATGGCTGTTGCATGGTCCTTGAAACACTCGAAGCA
TACTCATCTGCGATCATAGCGATGAGCGCCGAGGCAGCGGTACGTATTTG
AGGTCTATTAGCCATGCTGCATAAATTAAATTCTTGCGTCTTTTGTTCGA
TCTCAACTCCTCCCTCGTG
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