DN621540
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: YHPK_CAEEL (Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans GN=ZK795.3 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.734e-22 Identity = 50/126 (39.68%), Postives = 77/126 (61.11%), Query Frame = 2 Query: 218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595 PKI+ITT R SSR F E+ + PN+ RG YD+K++++ +K +D T +I+ R PD +L+ LP GPTA F ++ +V+R DI N G + P L+ +N ++LGHR +++ LFP Sbjct: 78 PKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFP 203
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_ASHGO (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii GN=IMP4 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.357e-21 Identity = 64/182 (35.16%), Postives = 96/182 (52.75%), Query Frame = 2 Query: 53 KRALELGEEPPARMTPRT-IENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595 K+AL G+ P + T ++ + DE+ DDE A S I+ PK+++TT R S+R F E+ + P S RG Y +K +++ +K T ++V+H +R P AL I P GPTA F L +VLR DI N GN + P L+ +NF T LG RV ++++ +FP Sbjct: 33 KQALAQGKPLPKEVADDTKLQRDYQYDESAQESIDDEYSA------LSGIVD----PKVIVTTSRDPSTRLSQFAKEVKLLFPTSVRLNRGNYIMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPTASFSLHNVVLRHDILNAGNQSEVHPHLIFDNFTTPLGQRVVKILKHMFP 204
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_SCHPO (U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe GN=imp4 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 6.733e-21 Identity = 52/126 (41.27%), Postives = 73/126 (57.94%), Query Frame = 2 Query: 218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595 PK+L+TT R SSR F E+ +IPNS+ RG + ++E A+ D T I+++H +R PD L+I LP GPT F L +VLR DI N G + P L+ N ++LG RV + +LFP Sbjct: 84 PKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFP 209
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_CANGA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata GN=IMP4 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20 Identity = 63/183 (34.43%), Postives = 99/183 (54.10%), Query Frame = 2 Query: 53 KRALELGEEPPARMTP-RTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAP-KILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595 K+AL G+ P + ++ D+++ +D+ AG D DE+S+ G ++++TT R SSR F E+ + PN+ RG Y + ++ KK T +IV+H +R P +L + P GPTA F L +VLR DI N GN + P L+ +NF T LG+RV ++++LFP Sbjct: 33 KQALAQGKPLPKELAEDEQLQKDFRYDQSMADNEDE---AGVD-DEYSA--SSGIVEARVIVTTSRDPSSRLAQFAKEIKLLFPNAVRLNRGNYVMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDILNRGNQSEVNPHLIFDNFTTPLGNRVVTILKNLFP 209
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_YEAST (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae GN=IMP4 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.695e-19 Identity = 58/176 (32.95%), Postives = 90/176 (51.14%), Query Frame = 2 Query: 65 ELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLF 592 EL E+ + R ++ +E +E DDE A + + P+I++TT R S+R F E+ + PN+ RG Y + +++ KK T ++V+H +R P +L I P GPTA F L +V+R DI N GN + P L+ +NF T LG RV +++ LF Sbjct: 45 ELAEDESLQKDFRYDQSLKESEEADDLQVDDEYAATSGIMD----------PRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLF 210
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.302e-19 Identity = 48/126 (38.10%), Postives = 74/126 (58.73%), Query Frame = 2 Query: 218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595 PK++ITT R SSR F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPTA+F L +V+R DI + G + P L+++ F++RLG RV +++ LFP Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTASEAKPHLIMHGFSSRLGKRVSDILRYLFP 208
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_RAT (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18 Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2 Query: 218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595 PK++ITT R SSR F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP 208
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_PONAB (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18 Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2 Query: 218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595 PK++ITT R SSR F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP 208
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18 Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2 Query: 218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595 PK++ITT R SSR F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP 208
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18 Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2 Query: 218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595 PK++ITT R SSR F EL V P + RG +++ ++ K T ++VVH +R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +++ LFP Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP 208 The following BLAST results are available for this feature:
BLAST of DN621540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >DN621540 ID=DN621540; Name=DN621540; organism=Citrus sinensis; type=EST; length=602bpback to top |