DN621540

Overview
NameDN621540
Unique NameDN621540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: YHPK_CAEEL (Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans GN=ZK795.3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.734e-22
Identity = 50/126 (39.68%), Postives = 77/126 (61.11%), Query Frame = 2
Query:  218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            PKI+ITT R  SSR   F  E+  + PN+    RG YD+K++++ +K +D T +I+    R  PD +L+  LP GPTA F ++ +V+R DI N G  +   P L+ +N  ++LGHR   +++ LFP
Sbjct:   78 PKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFP 203          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_ASHGO (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii GN=IMP4 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.357e-21
Identity = 64/182 (35.16%), Postives = 96/182 (52.75%), Query Frame = 2
Query:   53 KRALELGEEPPARMTPRT-IENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            K+AL  G+  P  +   T ++   + DE+     DDE  A       S I+     PK+++TT R  S+R   F  E+  + P S    RG Y +K +++  +K   T ++V+H +R  P AL I   P GPTA F L  +VLR DI N GN +   P L+ +NF T LG RV ++++ +FP
Sbjct:   33 KQALAQGKPLPKEVADDTKLQRDYQYDESAQESIDDEYSA------LSGIVD----PKVIVTTSRDPSTRLSQFAKEVKLLFPTSVRLNRGNYIMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPTASFSLHNVVLRHDILNAGNQSEVHPHLIFDNFTTPLGQRVVKILKHMFP 204          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_SCHPO (U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe GN=imp4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.733e-21
Identity = 52/126 (41.27%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            PK+L+TT R  SSR   F  E+  +IPNS+   RG   +  ++E A+  D T I+++H +R  PD L+I  LP GPT  F L  +VLR DI N G  +   P L+  N  ++LG RV   + +LFP
Sbjct:   84 PKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFP 209          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_CANGA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata GN=IMP4 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20
Identity = 63/183 (34.43%), Postives = 99/183 (54.10%), Query Frame = 2
Query:   53 KRALELGEEPPARMTP-RTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAP-KILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            K+AL  G+  P  +     ++     D+++   +D+   AG D DE+S+    G    ++++TT R  SSR   F  E+  + PN+    RG Y +  ++   KK   T +IV+H +R  P +L +   P GPTA F L  +VLR DI N GN +   P L+ +NF T LG+RV  ++++LFP
Sbjct:   33 KQALAQGKPLPKELAEDEQLQKDFRYDQSMADNEDE---AGVD-DEYSA--SSGIVEARVIVTTSRDPSSRLAQFAKEIKLLFPNAVRLNRGNYVMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDILNRGNQSEVNPHLIFDNFTTPLGNRVVTILKNLFP 209          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_YEAST (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae GN=IMP4 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.695e-19
Identity = 58/176 (32.95%), Postives = 90/176 (51.14%), Query Frame = 2
Query:   65 ELGEEPPARMTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLF 592
            EL E+   +   R  ++ +E +E      DDE  A +   +          P+I++TT R  S+R   F  E+  + PN+    RG Y +  +++  KK   T ++V+H +R  P +L I   P GPTA F L  +V+R DI N GN +   P L+ +NF T LG RV  +++ LF
Sbjct:   45 ELAEDESLQKDFRYDQSLKESEEADDLQVDDEYAATSGIMD----------PRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCILKHLF 210          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.302e-19
Identity = 48/126 (38.10%), Postives = 74/126 (58.73%), Query Frame = 2
Query:  218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            PK++ITT R  SSR   F  EL  V P +    RG +++  ++   K    T ++VVH +R  P  L++  LP GPTA+F L  +V+R DI + G  +   P L+++ F++RLG RV  +++ LFP
Sbjct:   83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTASEAKPHLIMHGFSSRLGKRVSDILRYLFP 208          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_RAT (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18
Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            PK++ITT R  SSR   F  EL  V P +    RG +++  ++   K    T ++VVH +R  P  L++  LP GPTA+F L  +V+R DI + G  +   P L+ + F++RLG RV  +++ LFP
Sbjct:   83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP 208          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_PONAB (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18
Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            PK++ITT R  SSR   F  EL  V P +    RG +++  ++   K    T ++VVH +R  P  L++  LP GPTA+F L  +V+R DI + G  +   P L+ + F++RLG RV  +++ LFP
Sbjct:   83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP 208          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18
Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            PK++ITT R  SSR   F  EL  V P +    RG +++  ++   K    T ++VVH +R  P  L++  LP GPTA+F L  +V+R DI + G  +   P L+ + F++RLG RV  +++ LFP
Sbjct:   83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP 208          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18
Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  218 PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            PK++ITT R  SSR   F  EL  V P +    RG +++  ++   K    T ++VVH +R  P  L++  LP GPTA+F L  +V+R DI + G  +   P L+ + F++RLG RV  +++ LFP
Sbjct:   83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFP 208          
The following BLAST results are available for this feature:
BLAST of DN621540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
YHPK_CAEEL2.734e-2239.68Brix domain-containing protein ZK795.3 OS=Caenorha... [more]
IMP4_ASHGO1.357e-2135.16U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_SCHPO6.733e-2141.27U3 small nucleolar ribonucleoprotein protein imp4 ... [more]
IMP4_CANGA4.364e-2034.43U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_YEAST3.695e-1932.95U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_BOVIN6.302e-1938.10U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_RAT1.834e-1838.10U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_PONAB1.834e-1838.10U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_MOUSE1.834e-1838.10U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_HUMAN1.834e-1838.10U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621540 ID=DN621540; Name=DN621540; organism=Citrus sinensis; type=EST; length=602bp
CCAGAAGAAAGTAGAGAAGCGCAAGAAACTCAAAGCGCGCGACGCTGCCG
AGAAACGCGCTCTCGAGCTCGGTGAGGAGCCTCCTGCGAGAATGACCCCT
CGCACCATCGAGAACACAAGAGAGCCTGATGAGACCGTATGCCGGCCTGA
CGATGATGAGCTATTTGCGGGTAATGATGCTGATGAGTTTAGTTCTATTC
TAAAGCAGGGATGCGCCCCGAAGATATTGATCACTACATGTCGTTTCAAT
TCCAGTAGAGGACCGGCCTTTATATCAGAGTTACTGTCTGTGATCCCAAA
TTCTCACTATTACAAGAGAGGAACCTATGATTTGAAGAAGATTATAGAAT
ATGCAAAGAAGAAGGACTTCACTTCTATAATAGTTGTTCACACCAATAGG
AGGGAACCAGATGCTCTACTAATCATTGGCCTGCCTGATGGACCTACTGC
CCATTTCAAGCTGTCAAAGCTTGTTTTACGCAAGGATATTAAGAATCATG
GAAATCCTACCGGTCACATTCCGGAGCTAGTGTTGAATAACTTCGCAACA
CGCCTGGGTCATCGTGTTGGGAGATTGATACAGTCACTTTTCCCTCAAAG
TC
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