DN621540

Overview
NameDN621540
Unique NameDN621540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_YARLI (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica GN=IMP4 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.648e-17
Identity = 55/167 (32.93%), Postives = 88/167 (52.69%), Query Frame = 2
Query:   98 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCA-PKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            P+ + +  E  +T+     DE       DE+S++   G   PK+++TT R  S+R   F  E+  + P S    RG   L  ++   K    + +IV+H +R  P A+ +   P GPTA+F L  +VLR D+ + GN +   P L+ +NF T LG RV ++++ LFP
Sbjct:   43 PKDVADDEELRKTIAY---DESVQDEIDDEYSAM--SGITDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSIRLNRGGTVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHDLPDTGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFP 204          
BLAST of DN621540 vs. ExPASy Swiss-Prot
Match: IMP4_DEBHA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces hansenii GN=IMP4 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  182 DEFSSILKQGCAPKILITTCRFNSSRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFP 595
            DE+S+ L     PK+LITT R  S +   F  E+  + PNS    RG Y +  ++   ++   + +I++H +R  P +L I   P GP+  F L  + LR D+   GN +   P LV  NF + LG RV ++++ LFP
Sbjct:   68 DEYSA-LSGISEPKVLITTSRNPSVKLLQFSKEIKLMFPNSIKLNRGNYVITDLVATCQRVQISDLIILHEHRGIPTSLTISHFPHGPSIIFTLHNVKLRHDLPEIGNSSESYPHLVFENFTSELGKRVVKIMKHLFP 204          
The following BLAST results are available for this feature:
BLAST of DN621540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
IMP4_YARLI2.648e-1732.93U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_DEBHA8.518e-1634.78U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621540 ID=DN621540; Name=DN621540; organism=Citrus sinensis; type=EST; length=602bp
CCAGAAGAAAGTAGAGAAGCGCAAGAAACTCAAAGCGCGCGACGCTGCCG
AGAAACGCGCTCTCGAGCTCGGTGAGGAGCCTCCTGCGAGAATGACCCCT
CGCACCATCGAGAACACAAGAGAGCCTGATGAGACCGTATGCCGGCCTGA
CGATGATGAGCTATTTGCGGGTAATGATGCTGATGAGTTTAGTTCTATTC
TAAAGCAGGGATGCGCCCCGAAGATATTGATCACTACATGTCGTTTCAAT
TCCAGTAGAGGACCGGCCTTTATATCAGAGTTACTGTCTGTGATCCCAAA
TTCTCACTATTACAAGAGAGGAACCTATGATTTGAAGAAGATTATAGAAT
ATGCAAAGAAGAAGGACTTCACTTCTATAATAGTTGTTCACACCAATAGG
AGGGAACCAGATGCTCTACTAATCATTGGCCTGCCTGATGGACCTACTGC
CCATTTCAAGCTGTCAAAGCTTGTTTTACGCAAGGATATTAAGAATCATG
GAAATCCTACCGGTCACATTCCGGAGCTAGTGTTGAATAACTTCGCAACA
CGCCTGGGTCATCGTGTTGGGAGATTGATACAGTCACTTTTCCCTCAAAG
TC
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