DN621537

Overview
NameDN621537
Unique NameDN621537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_ANASP (3-isopropylmalate dehydrogenase OS=Anabaena sp. (strain PCC 7120) GN=leuB PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.049e-58
Identity = 107/152 (70.39%), Postives = 131/152 (86.18%), Query Frame = -2
Query:  293 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 748
            IT ++ EYPDVELSH+YVDNAAMQL+R PKQFDTIVT N+FGDILSD A+M+TGSIGMLPSASLG SGPG+FEP+HGSAPDIAGQDKANPLA +LSAAM+L+Y L +  AA +IE+AVL  L++G RTGDI S G  L+GC+ MG+ ++K++
Sbjct:  208 ITNLSQEYPDVELSHLYVDNAAMQLVRAPKQFDTIVTGNLFGDILSDAAAMLTGSIGMLPSASLGASGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLRYALDQPQAADKIEQAVLQVLEQGDRTGDIISVGMNLLGCRGMGDSLIKAL 359          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_SYNJB (3-isopropylmalate dehydrogenase OS=Synechococcus sp. GN=leuB PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.921e-57
Identity = 105/155 (67.74%), Postives = 131/155 (84.52%), Query Frame = -2
Query:  284 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSVETQ 748
            + AIA+EYP+VELSH+Y+DNAAMQL+R PKQFD I+T N+FGDILSDEA+M+TGSIGMLPSASLG SGPGL+EP+HGSAPDIAGQDKANP+A +LS A++L+Y L +  AA RIE+AV   L +G RT D+YS G  LVGCQEMGE+++ ++  Q
Sbjct:  214 VNAIAAEYPEVELSHLYIDNAAMQLVRWPKQFDVILTGNLFGDILSDEAAMLTGSIGMLPSASLGSSGPGLYEPVHGSAPDIAGQDKANPIAQVLSGALMLRYSLDQPQAADRIEQAVEAVLAQGYRTPDLYSEGMTLVGCQEMGEKLVAALSQQ 368          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_NEIMA (3-isopropylmalate dehydrogenase OS=Neisseria meningitidis serogroup A GN=leuB PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.921e-57
Identity = 109/149 (73.15%), Postives = 124/149 (83.22%), Query Frame = -2
Query:  293 IASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 739
            I  EYPDVELSHMYVDNAAMQL+R PKQFD I T NIFGDILSDEASM+TGSIGMLPSASL E+G GL+EP HGSAPDIAGQ+KANPLAT+LS AMLL+Y L +E  A+++E AV   L +GLRTGDIY  GTKLV C EMG+ VL ++
Sbjct:  208 IGKEYPDVELSHMYVDNAAMQLVRAPKQFDVIATGNIFGDILSDEASMLTGSIGMLPSASLDENGKGLYEPSHGSAPDIAGQNKANPLATVLSLAMLLRYSLNDEARAQQVENAVQKVLQQGLRTGDIYEEGTKLVSCSEMGDAVLATL 356          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_NEIMB (3-isopropylmalate dehydrogenase OS=Neisseria meningitidis serogroup B GN=leuB PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.490e-56
Identity = 109/149 (73.15%), Postives = 123/149 (82.55%), Query Frame = -2
Query:  293 IASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 739
            I  EYPDVELSHMYVDNAAMQL+R PKQFD I T NIFGDILSDEASM+TGSIGMLPSASL E+G GL+EP HGSAPDIAGQ+KANPLATILS AMLL+Y L +E  A+++E AV   L +GLRT DIY  GTKLV C EMG+ VL ++
Sbjct:  208 IGKEYPDVELSHMYVDNAAMQLVRAPKQFDVIATGNIFGDILSDEASMLTGSIGMLPSASLDENGKGLYEPSHGSAPDIAGQNKANPLATILSLAMLLRYSLNDEARAQQVENAVQKVLQQGLRTSDIYEEGTKLVSCSEMGDAVLAAL 356          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_NEIG1 (3-isopropylmalate dehydrogenase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=leuB PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.490e-56
Identity = 108/149 (72.48%), Postives = 124/149 (83.22%), Query Frame = -2
Query:  293 IASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 739
            I  +YPDVELSHMYVDNAAMQL+R PKQFD I T NIFGDILSDEASM+TGSIGMLPSASL E+G GL+EP HGSAPDIAGQ+KANPLATILS AMLL+Y L +E  A+++E +V   L +GLRTGDIY  GTKLV C EMG+ VL ++
Sbjct:  208 IGKQYPDVELSHMYVDNAAMQLVRAPKQFDVIATGNIFGDILSDEASMLTGSIGMLPSASLDENGKGLYEPSHGSAPDIAGQNKANPLATILSLAMLLRYSLNDEARAQQVENSVQKVLQQGLRTGDIYEEGTKLVSCSEMGDAVLAAL 356          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_GLOVI (3-isopropylmalate dehydrogenase OS=Gloeobacter violaceus GN=leuB PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.335e-56
Identity = 102/153 (66.67%), Postives = 128/153 (83.66%), Query Frame = -2
Query:  290 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSVE 748
            +  +A EYPDVEL+HMYVDN AMQL+R P+QFDTIVT N+FGDILSDEA+M+TGSIGMLPSASLG  GPGL+EP+HGSAPDIAGQDKANPLA +LS AMLL++ L +  AA+ +E+AV   L++G RTGDI + G ++VGC+ MGE++L + E
Sbjct:  208 LVGLAPEYPDVELTHMYVDNCAMQLVRRPRQFDTIVTENMFGDILSDEAAMLTGSIGMLPSASLGSGGPGLYEPVHGSAPDIAGQDKANPLAQVLSGAMLLRHSLRQPEAAQAVERAVQTVLEQGYRTGDIAAPGAQIVGCRAMGEQLLAAFE 360          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_SPIPL (3-isopropylmalate dehydrogenase OS=Spirulina platensis GN=leuB PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.261e-55
Identity = 106/145 (73.10%), Postives = 124/145 (85.52%), Query Frame = -2
Query:  314 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMG 748
            I A+A++YP+VELSH+YVDNAAMQL+R PKQFDTIVT N+FGDILSD A+M+TGSIGMLPSASLG SGPG+FEP+HGSAPDIAGQDKANPLA +LSAAM+L+YGL E  A+  +EKAVL  LD G  TGDI S G K VGC++ G
Sbjct:  208 IMALAADYPEVELSHLYVDNAAMQLVRWPKQFDTIVTGNLFGDILSDAAAMLTGSIGMLPSASLGASGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLRYGLDEPAASDPVEKAVLKVLDWGYPTGDIMSEGMKAVGCRKWG 352          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_CHRVO (3-isopropylmalate dehydrogenase OS=Chromobacterium violaceum GN=leuB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 9.038e-54
Identity = 103/149 (69.13%), Postives = 122/149 (81.88%), Query Frame = -2
Query:  293 IASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 739
            +A EYP VELSHMYVDNAAMQL+RNPKQFD +VT NIFGDILSDEASM+TGSIGMLPSASL ++  GL+EP HGSAPDIAGQ+ ANPLATILSAAM+L+Y  G+E AA+R+E AV   L +G RT DIY AG + V C  MG+ V+ ++
Sbjct:  206 VAKEYPQVELSHMYVDNAAMQLVRNPKQFDVMVTGNIFGDILSDEASMLTGSIGMLPSASLDQNNKGLYEPSHGSAPDIAGQNLANPLATILSAAMMLRYSFGQEAAARRVEDAVKKVLAQGYRTADIYEAGCEKVSCSGMGDAVVAAM 354          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_BORA1 (3-isopropylmalate dehydrogenase OS=Bordetella avium (strain 197N) GN=leuB PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.180e-53
Identity = 106/152 (69.74%), Postives = 122/152 (80.26%), Query Frame = -2
Query:  293 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 748
            +  +A EYPDVELSHMYVDNAAMQL+RNP+QFD IVT N+FGDILSDEA+M+TGSIGMLPSASL  SG GL+EP HGSAPDIAGQ  ANPLATILSAAMLL+Y L +   A RIE AV   L +GLRT DI+ AGT  V   +MG+ VLK++
Sbjct:  206 VIEVAREYPDVELSHMYVDNAAMQLVRNPRQFDVIVTGNLFGDILSDEAAMLTGSIGMLPSASLNASGQGLYEPSHGSAPDIAGQGIANPLATILSAAMLLRYSLNQPAQADRIEAAVRKVLAQGLRTADIHEAGTTKVSTSQMGDAVLKAL 357          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_PROMM (3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus (strain MIT 9313) GN=leuB PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.486e-53
Identity = 99/152 (65.13%), Postives = 124/152 (81.58%), Query Frame = -2
Query:  293 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 748
            + A+A+ Y DVELSHMYVDNAAMQL+RNP+QFD ++T N+FGDILSDEA+M+TGSIGMLPSASLG  GPGLFEP+HGSAPDIAGQD ANP+A +L AAM+L+ GL E  AA+ +E +V   L  G RTGD+ S G   +GC EMGE++L+++
Sbjct:  206 VDALAANYGDVELSHMYVDNAAMQLVRNPRQFDVLLTGNLFGDILSDEAAMLTGSIGMLPSASLGSEGPGLFEPVHGSAPDIAGQDLANPMAMVLCAAMMLRIGLKENDAARALEGSVERVLAAGFRTGDLMSEGCTQLGCAEMGEQLLQAL 357          
The following BLAST results are available for this feature:
BLAST of DN621537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_ANASP6.049e-5870.393-isopropylmalate dehydrogenase OS=Anabaena sp. (s... [more]
LEU3_SYNJB3.921e-5767.743-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_NEIMA3.921e-5773.153-isopropylmalate dehydrogenase OS=Neisseria menin... [more]
LEU3_NEIMB1.490e-5673.153-isopropylmalate dehydrogenase OS=Neisseria menin... [more]
LEU3_NEIG11.490e-5672.483-isopropylmalate dehydrogenase OS=Neisseria gonor... [more]
LEU3_GLOVI4.335e-5666.673-isopropylmalate dehydrogenase OS=Gloeobacter vio... [more]
LEU3_SPIPL1.261e-5573.103-isopropylmalate dehydrogenase OS=Spirulina plate... [more]
LEU3_CHRVO9.038e-5469.133-isopropylmalate dehydrogenase OS=Chromobacterium... [more]
LEU3_BORA11.180e-5369.743-isopropylmalate dehydrogenase OS=Bordetella aviu... [more]
LEU3_PROMM4.486e-5365.133-isopropylmalate dehydrogenase OS=Prochlorococcus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621537 ID=DN621537; Name=DN621537; organism=Citrus sinensis; type=EST; length=749bp
TCAATTTTAATTTGATTTTCTAATTTGCATCAACATTGAGACACCAGAGC
AAACTGTAAACAAAGTGCAAATTAAAAGACTTGCTTTTATTTTCCAAAAG
TTGTCACAATGATATTCCATGTTACAACAGCTCCAGATGAAGGCGGTTTC
AGAAAGACGGAAAAGATACAACACCAACTCAATATCTTATCAACCAAAAA
TCTACCACCCAAAAGATTACAAAGCCGTGATCCTATAGCATCCTTAGTGC
TGGTCCGATTTTAATTTAAACAGCAGCAGGAACTTGAGTCTCTACTGATT
TCAAAACCTCTTCGCCCATCTCCTGGCATCCTACTAATTTAGTCCCAGCA
GAGTATATGTCACCCGTTCGAAGCCCCTTATCTAGAGTATCTAAAACTGC
TTTCTCAATTCTCTTTGCAGCATGTTCCTCCCCTAAGCCATACTTCAAAA
GCATAGCAGCACTGAGTATAGTAGCCAATGGGTTTGCTTTATCCTGTCCA
GCAATATCGGGAGCAGAACCATGTATTGGTTCAAAGAGTCCAGGTCCCGA
TTCACCAAGACTGGCAGATGGGAGCATTCCTATACTTCCAGTAATCATTG
AAGCCTCATCAGATAAAATGTCACCAAATATGTTGTTTGTCACAATTGTA
TCAAACTGTTTTGGATTGCGAATAAGTTGCATTGCAGCGTTGTCGACATA
CATATGTGAGAGTTCAACATCAGGATACTCTGAGGCTATTGCCGTGATT
back to top