DN621537

Overview
NameDN621537
Unique NameDN621537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_PSEPK (3-isopropylmalate dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=leuB PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.885e-51
Identity = 100/149 (67.11%), Postives = 121/149 (81.21%), Query Frame = -2
Query:  293 IASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 739
            +A +YPDVELSHMYVDNAAMQL+R PKQFD +VT+N+FGDILSDEASM+TGSIGMLPSASL     G++EP HGSAPDIAG   ANPLATILS +M+L+Y   +  AA+ IEKAV   LD+GLRTGDI+S G + VG QEMG+ V+ ++
Sbjct:  209 VAKDYPDVELSHMYVDNAAMQLVRAPKQFDVMVTDNMFGDILSDEASMLTGSIGMLPSASLDADNKGMYEPCHGSAPDIAGLGIANPLATILSVSMMLRYSFNQSAAAEAIEKAVSLVLDQGLRTGDIFSEGCRKVGTQEMGDAVVAAL 357          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_NITMU (3-isopropylmalate dehydrogenase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=leuB PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.885e-51
Identity = 101/152 (66.45%), Postives = 116/152 (76.32%), Query Frame = -2
Query:  293 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 748
            +T  A EYPDVELSHM VDNAAMQL+RNP+QFD +VT N+FGDILSDEASM+TGSIGMLPSASL E   GL+EPIHGSAPDIAG+D ANPLAT+LS AM+L+Y    E  A RIE+AV   L  G RT DIY  G   +G   MG+ VL S+
Sbjct:  202 VTETAGEYPDVELSHMLVDNAAMQLVRNPRQFDVVVTGNMFGDILSDEASMLTGSIGMLPSASLDERNKGLYEPIHGSAPDIAGKDVANPLATVLSVAMMLRYTFDREEEASRIERAVKKVLADGYRTADIYEPGKMKIGTAAMGDAVLASL 353          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_SYNSC (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain CC9605) GN=leuB PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.215e-51
Identity = 97/152 (63.82%), Postives = 123/152 (80.92%), Query Frame = -2
Query:  293 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 748
            + A+A  Y  VE+SHMYVDNAAMQL+R+P+QFD ++T N+FGDILSDEA+M+TGSIGMLPSASLG  GPGLFEP+HGSAPDIAGQDKANP+A +LSAAM+L+ GL +  AA  +E AV   L  G RTGD+ + G   +GC+ MGE++LK++
Sbjct:  206 VDAMAPSYGPVEVSHMYVDNAAMQLVRDPRQFDVLLTGNLFGDILSDEAAMLTGSIGMLPSASLGSEGPGLFEPVHGSAPDIAGQDKANPMAMVLSAAMMLRIGLKQAAAADDLEAAVDAVLAGGFRTGDLMAEGCTQLGCRAMGEQLLKAL 357          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_SACD2 (3-isopropylmalate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=leuB PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.199e-51
Identity = 101/152 (66.45%), Postives = 119/152 (78.29%), Query Frame = -2
Query:  293 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 748
            I +I+ +YP+VELSHMYVDNAAMQL+R PKQFD +VT N+FGDILSD A+M+TGSIGMLPSASL +   GL+EP+HGSAPDIAGQ  ANPLATILSAAM+L+Y L E  AA  IE AV   LD GLR+ DI+S G K V  QEMG+ V   +
Sbjct:  206 IQSISKDYPEVELSHMYVDNAAMQLVRAPKQFDVVVTGNMFGDILSDTAAMLTGSIGMLPSASLNQDSKGLYEPVHGSAPDIAGQGVANPLATILSAAMMLRYSLNEAAAADAIEAAVGAVLDDGLRSADIFSEGMKKVSTQEMGDAVAAKI 357          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_ACIAD (3-isopropylmalate dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=leuB PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.199e-51
Identity = 100/147 (68.03%), Postives = 121/147 (82.31%), Query Frame = -2
Query:  293 SEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 733
            ++YP+++LSHMYVDNAAMQL+R PKQFD IVT N+FGDILSDEA+M+TGSIGMLPSASL E+G G++EP HGSAPDIAGQ+ ANPLATILS AM+L+Y   EE AAK IE AV   LD+GLRT DI S G + VG  EMG+ V+ ++
Sbjct:  212 AQYPNIQLSHMYVDNAAMQLVRAPKQFDVIVTGNLFGDILSDEAAMLTGSIGMLPSASLDENGKGMYEPCHGSAPDIAGQNVANPLATILSVAMMLRYTFREEAAAKAIEDAVGQVLDQGLRTADIMSEGMQRVGTVEMGQAVVAAL 358          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_AZOSE (3-isopropylmalate dehydrogenase OS=Azoarcus sp. (strain EbN1) GN=leuB PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.483e-51
Identity = 101/149 (67.79%), Postives = 120/149 (80.54%), Query Frame = -2
Query:  293 IASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 739
            +A+EYPDVELSHM VDNAAMQL+R PKQFD +VT N+FGDILSDEASM+TGSIGMLPSASL  +  GL+EP HGSAPDIAGQ  ANPLATILS AM+L+Y   +E+ A RIE AV   L +GLRTGDI+  GT  VG ++MG+ VL ++
Sbjct:  202 LAAEYPDVELSHMLVDNAAMQLVRAPKQFDVMVTGNMFGDILSDEASMLTGSIGMLPSASLDANNKGLYEPSHGSAPDIAGQGIANPLATILSVAMMLRYTFNQENGALRIENAVKKVLAQGLRTGDIFEPGTTKVGTKQMGDAVLAAL 350          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_SYNPX (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain WH8102) GN=leuB PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.162e-51
Identity = 96/152 (63.16%), Postives = 122/152 (80.26%), Query Frame = -2
Query:  293 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 748
            + A+A  Y DVE+SHMYVDNAAMQL+R+P+QFD ++T N+FGDILSDEA+M+TGSIGMLPSASLG   PGLFEP+HGSAPDIAGQDKANP+A +LSAAM+L+ GL +  AA  +E AV   L  G RTGD+ + G   +GC+ MG+ +LK++
Sbjct:  206 VDAMAPAYSDVEVSHMYVDNAAMQLVRSPRQFDVLLTGNLFGDILSDEAAMLTGSIGMLPSASLGSDCPGLFEPVHGSAPDIAGQDKANPMAMVLSAAMMLRIGLKQTEAAADLEAAVDKVLAAGFRTGDLMAEGCTALGCRAMGDALLKAL 357          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_THIDA (3-isopropylmalate dehydrogenase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=leuB PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.222e-50
Identity = 99/146 (67.81%), Postives = 117/146 (80.14%), Query Frame = -2
Query:  302 IASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVL 739
            +A +YP+VELSHMYVDNAAMQLIR PKQFDTIVT NIFGDILSD ASM++GSIGMLPSASL E   G++EPIHGSAPDIAG++ ANPLATILS AM+ +Y   +   A RIE AV   + KG RTGDI++ GT+ V C EMG+ V+
Sbjct:  205 VAKDYPEVELSHMYVDNAAMQLIRAPKQFDTIVTGNIFGDILSDAASMLSGSIGMLPSASLDEHNKGMYEPIHGSAPDIAGKNLANPLATILSVAMMYRYTFADLATADRIENAVKQVIAKGYRTGDIWTEGTQKVSCSEMGDAVV 350          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_THIFE (3-isopropylmalate dehydrogenase OS=Thiobacillus ferrooxidans GN=leuB PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.595e-50
Identity = 100/152 (65.79%), Postives = 122/152 (80.26%), Query Frame = -2
Query:  293 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 748
            +T +A +YPDV LSHMYVDNAAMQLIR P QFD ++T N+FGDILSDEAS +TGSIGMLPSASLGE G  ++EPIHGSAPDIAGQDKANPLATILS AM+L++ L  E  A+R+E AV   LD+GLRT DI + GT ++G + MG  V+ ++
Sbjct:  204 VTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGE-GRAMYEPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAVQRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNAL 354          
BLAST of DN621537 vs. ExPASy Swiss-Prot
Match: LEU3_BORPE (3-isopropylmalate dehydrogenase OS=Bordetella pertussis GN=leuB PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.595e-50
Identity = 101/152 (66.45%), Postives = 119/152 (78.29%), Query Frame = -2
Query:  293 ITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEHAAKRIEKAVLDTLDKGLRTGDIYSAGTKLVGCQEMGEEVLKSV 748
            +  ++ +Y DVELSHMYVDNAAMQL+RNP+QFD IVT N+FGDILSDEA+M+TGSIGMLPSASL  +G GL+EP HGSAPDIAGQ  ANPLATILSAAMLL+Y L     A R+E AV   L  GLRT DI+ AGT  V   +MG+ VLK++
Sbjct:  206 VIEVSRDYLDVELSHMYVDNAAMQLVRNPRQFDVIVTGNLFGDILSDEAAMLTGSIGMLPSASLNAAGQGLYEPSHGSAPDIAGQGIANPLATILSAAMLLRYSLNLAPQADRVEAAVRKVLADGLRTADIHEAGTTKVSTSQMGDAVLKAL 357          
The following BLAST results are available for this feature:
BLAST of DN621537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_PSEPK1.885e-5167.113-isopropylmalate dehydrogenase OS=Pseudomonas put... [more]
LEU3_NITMU1.885e-5166.453-isopropylmalate dehydrogenase OS=Nitrosospira mu... [more]
LEU3_SYNSC3.215e-5163.823-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_SACD24.199e-5166.453-isopropylmalate dehydrogenase OS=Saccharophagus ... [more]
LEU3_ACIAD4.199e-5168.033-isopropylmalate dehydrogenase OS=Acinetobacter s... [more]
LEU3_AZOSE5.483e-5167.793-isopropylmalate dehydrogenase OS=Azoarcus sp. (s... [more]
LEU3_SYNPX7.162e-5163.163-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_THIDA1.222e-5067.813-isopropylmalate dehydrogenase OS=Thiobacillus de... [more]
LEU3_THIFE1.595e-5065.793-isopropylmalate dehydrogenase OS=Thiobacillus fe... [more]
LEU3_BORPE1.595e-5066.453-isopropylmalate dehydrogenase OS=Bordetella pert... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621537 ID=DN621537; Name=DN621537; organism=Citrus sinensis; type=EST; length=749bp
TCAATTTTAATTTGATTTTCTAATTTGCATCAACATTGAGACACCAGAGC
AAACTGTAAACAAAGTGCAAATTAAAAGACTTGCTTTTATTTTCCAAAAG
TTGTCACAATGATATTCCATGTTACAACAGCTCCAGATGAAGGCGGTTTC
AGAAAGACGGAAAAGATACAACACCAACTCAATATCTTATCAACCAAAAA
TCTACCACCCAAAAGATTACAAAGCCGTGATCCTATAGCATCCTTAGTGC
TGGTCCGATTTTAATTTAAACAGCAGCAGGAACTTGAGTCTCTACTGATT
TCAAAACCTCTTCGCCCATCTCCTGGCATCCTACTAATTTAGTCCCAGCA
GAGTATATGTCACCCGTTCGAAGCCCCTTATCTAGAGTATCTAAAACTGC
TTTCTCAATTCTCTTTGCAGCATGTTCCTCCCCTAAGCCATACTTCAAAA
GCATAGCAGCACTGAGTATAGTAGCCAATGGGTTTGCTTTATCCTGTCCA
GCAATATCGGGAGCAGAACCATGTATTGGTTCAAAGAGTCCAGGTCCCGA
TTCACCAAGACTGGCAGATGGGAGCATTCCTATACTTCCAGTAATCATTG
AAGCCTCATCAGATAAAATGTCACCAAATATGTTGTTTGTCACAATTGTA
TCAAACTGTTTTGGATTGCGAATAAGTTGCATTGCAGCGTTGTCGACATA
CATATGTGAGAGTTCAACATCAGGATACTCTGAGGCTATTGCCGTGATT
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