DN621533

Overview
NameDN621533
Unique NameDN621533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.905e-14
Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  405 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 656
            HDGPFGA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  237 HDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.365e-12
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = -2
Query:  399 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 641
            GA   + L   G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  170 GAQVAQFLVKRGLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = -2
Query:  396 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 641
            GA   + L   G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  170 GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = -2
Query:  399 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 641
            GA   + L   G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  170 GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -2
Query:  396 ATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 638
            A   ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  178 AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  393 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 656
            HD    +   +++  +G+  ++PG K+     +E  +V  T +V PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:  169 HDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  393 DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 653
            D  +GA G           + PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  216 DDEYGAPG----------HDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of DN621533 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = -2
Query:  393 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 641
            GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  169 GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
The following BLAST results are available for this feature:
BLAST of DN621533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
THI4_YEAST1.905e-1452.33Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRHO1.365e-1248.15Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU3.042e-1246.34Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB6.776e-1248.15Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE6.776e-1245.68Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_PYRAR1.156e-1138.64Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_HALWD1.972e-1140.23Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_PYRKO3.363e-1143.37Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621533 ID=DN621533; Name=DN621533; organism=Citrus sinensis; type=EST; length=657bp
TTTTTTTTAAAAGGGAACAGCCCAAGGGCAGTCTTACACATAACACAGAT
AACAAGGACTAGATACGCAACTGCAAATTCACCTCCGAAAAACTCACAAC
GGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTCCATGATGGA
CCGGAAACAAACACTTTATTCACAAAACCTCACAACATTATCTCATTATT
CGCATCAACCATCCATCACAACCACCTAAATACAACTACTTTTTTGCCAG
AGTTTATTTGCATGCACACAGCTGATGAGTGATGATGCCTGTTATTACCA
AATTAAGCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTC
AGGGTGAACGCCTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCCA
GTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGCT
CCAAATGTTGGCCCCATTCGAGGAGCACCATCAATCTCGGCAACTTCCAT
GCCGGTAACTATCATACCAGGCACAACCTCCCTGGTCAGCCTCACAATAG
CATCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCCTCA
ATCATTCCGATACTCTTCAACCTCTTTACTCCAGTGGCCCCAAAAGGCCC
ATCATGG
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