DN621525

Overview
NameDN621525
Unique NameDN621525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.677e-31
Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = -3
Query:  303 VNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLN 611
            + PP RT+ KV K GS GRS+D+T F +YHELRS +A MFGL+G LE P  S W+LV+VD ENDVLL+GD PW EF+N V CI+ILSP EVQQM + G  +LN
Sbjct:  847 MKPPVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGMHVLN 949          
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.960e-30
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = -3
Query:  273 RTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNS 596
            RTF KVYK G+ GRS+DI ++S Y EL+  LARMFG+EG LED  R GW+LV+ D E+D+LLLGD PW EFVN V CI+ILSP EVQQM   G+   N +P Q  S+S
Sbjct: 1009 RTFTKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDILLLGDDPWEEFVNCVRCIRILSPQEVQQMSLDGDLGSNVLPNQACSSS 1116          
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.866e-30
Identity = 69/129 (53.49%), Postives = 88/129 (68.22%), Query Frame = -3
Query:  222 RTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDDYATR----QDSRNLSAG 596
            RTF KVYK G+ GRS+D+++FS Y EL+  LARMF +EG LE+  R GW+LV+ D E+D+LLLGD PW EFV  V CI+ILSP EVQQM   G +L N++P  +  +SS    A R    Q+S N S G
Sbjct: 1027 RTFTKVYKRGAVGRSIDMSQFSGYDELKHALARMFSIEGQLEERQRIGWKLVYKDHEDDILLLGDDPWEEFVGCVKCIRILSPQEVQQMSLEGCDLGNNIPPNQACSSSDGGNAWRARCDQNSGNPSNG 1155          
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 6.595e-30
Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = -3
Query:  273 PPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNS 605
            P  RT+ KV K+GS GRS+D+T F  Y EL+S +  MFGLEG L  P  SGW+LV+VD E+DVLL+GD PW EFV  V CI+ILSP EVQQM + G +LLNS  I  L  S
Sbjct:  790 PRVRTYTKVQKTGSVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSAGINDLKTS 900          
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.275e-29
Identity = 64/112 (57.14%), Postives = 81/112 (72.32%), Query Frame = -3
Query:  261 RTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDD 596
            RT+ KV K GS GRS+D+T++S Y ELR +LARMFG+EG LEDPL S W+LV+ D END+LL+GD PW EFVN V  IKILS  EVQQM   G+  L ++P    +N +C +
Sbjct:  958 RTYTKVQKRGSVGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWEEFVNCVQNIKILSSVEVQQMSLDGD--LAAIP---TTNQACSE 1064          
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.624e-28
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = -3
Query:  261 RTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDD 596
            RTF KV K GS GRS+DIT++  Y ELR +LA MFG++G LEDP R  W+LV+VD END+LL+GD PW EFV  V  IKILS  EVQQM   G+  L  VP Q  + S+ DD
Sbjct:  940 RTFTKVQKRGSVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMSLDGD--LGGVPPQTQACSASDD 1049          
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.624e-28
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = -3
Query:  261 RTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSCDD 596
            RTF KV K GS GRS+DIT++  Y ELR +LA MFG++G LEDP R  W+LV+VD END+LL+GD PW EFV  V  IKILS  EVQQM   G+  L  VP Q  + S+ DD
Sbjct:  940 RTFTKVQKRGSVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMSLDGD--LGGVPPQTQACSASDD 1049          
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.121e-28
Identity = 63/110 (57.27%), Postives = 77/110 (70.00%), Query Frame = -3
Query:  267 RTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNSSC 596
            RT+ KV K GS GRS+D+ ++  Y ELR +LARMFG+EG LEDP  S W+LV+VD END+LL+GD PW EFVN V  IKILS  EVQQM   GN     VP+   +N +C
Sbjct: 1037 RTYTKVQKRGSVGRSIDVNRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLDGN--FAGVPV---TNQAC 1141          
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.387e-25
Identity = 57/115 (49.57%), Postives = 77/115 (66.96%), Query Frame = -3
Query:  273 GQVNPPNRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGNELLNSVPIQRLSNS 617
            G  +   RT+ KV+K G+ GRS+DI ++S Y EL+ ++ARMFG+EG L D  R GW+LV+ D E DVLL+GD PW +FV  V CI+ILSP E  QM   G+   + +P Q  S+S
Sbjct:  991 GPAHQRMRTYTKVHKRGAVGRSIDINRYSGYDELKHDVARMFGIEGQLGDQNRVGWKLVYEDHEKDVLLVGDDPWEDFVKCVRCIRILSPQEEMQMRLVGDFGDSFLPNQACSSS 1105          
BLAST of DN621525 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = -3
Query:  315 RTFVKVYKSG-SFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPPEVQQMGKRGN 596
            R+  KV+K G + GRS+D++KFS+Y EL++EL +MF  +G L    ++ WQ+V+ D E D++L+GD PW EF + V  I I +  EVQ+M  + N
Sbjct:  692 RSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKN-WQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSN 785          
The following BLAST results are available for this feature:
BLAST of DN621525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ARFK_ORYSI2.677e-3162.14Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFE_ORYSJ2.960e-3060.19Auxin response factor 5 OS=Oryza sativa subsp. jap... [more]
ARFS_ORYSJ3.866e-3053.49Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
ARFE_ARATH6.595e-3058.56Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFS_ARATH4.275e-2957.14Auxin response factor 19 OS=Arabidopsis thaliana G... [more]
ARFP_ORYSJ1.624e-2858.04Auxin response factor 16 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSI1.624e-2858.04Auxin response factor 16 OS=Oryza sativa subsp. in... [more]
ARFG_ARATH2.121e-2857.27Auxin response factor 7 OS=Arabidopsis thaliana GN... [more]
ARFU_ORYSJ6.387e-2549.57Auxin response factor 21 OS=Oryza sativa subsp. ja... [more]
ARFD_ORYSJ7.078e-1644.21Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621525 ID=DN621525; Name=DN621525; organism=Citrus sinensis; type=EST; length=631bp
TTGGACAACTCTCCTAATCAATATTGATTGCGTATTTCATACCACAGAAT
AGAAAATGTATCTTATAATTACAGTTTAGCTTATATATAAACTTTAAGCT
AAAATTAGGTAGCCTCTCGCTACCCCTACGTGGATTGAAACAGACACTAA
TATTACAGAAGAGAGAATGGTATCTTAACTGGTTAAATTGATCAGAAATC
CAGTGACCCCACGGATGTTATACCAGCACTCAAATTTCTGGAGTCCTGCC
GGGTTGCATAATCATCACAGCTGCTGTTGGAGAGCCTCTGAATTGGAACT
GAGTTCAGAAGCTCATTGCCACGTTTGCCCATTTGCTGCACTTCTGGTGG
TGAGAGTATTTTGATACACCACACACTGTTTACAAACTCCGGCCAGGGGC
CATCACCAAGGAGAAGTACATCATTCTCCCGGTCAACGAATACAAGCTGC
CAGCCTGATCTCAGGGGGTCCTCCAAATGGCCTTCAAGGCCAAACATGCG
AGCTAGTTCACTGCGCAGCTCATGGTAGCTACTGAATTTGGTGATATCCA
GTGATCTACCGAAGGAACCCGACTTGTAAACCTTAACAAAGGTTCTGTTG
GGTGGGTTTACTTGGCCCACATTTTCTGGAG
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