DN621524

Overview
NameDN621524
Unique NameDN621524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.189e-48
Identity = 89/128 (69.53%), Postives = 107/128 (83.59%), Query Frame = 3
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            +FTVTSKA D++ +F+ELY FKW           ++N +GVVAGVS AIN+GY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV+VWSILLASIFSLLWVR+DPF  +  GP +E+CG++C
Sbjct:  965 SFTVTSKAGDDE-EFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKNNGPLLEECGLDC 1091          
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.648e-48
Identity = 86/112 (76.79%), Postives = 98/112 (87.50%), Query Frame = 3
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPF 338
            NFTVTSKA+DEDGDF ELY+FKW           ++NL+G+VAGVSYA+NSGYQSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VWS+LLASIFSLLWVR++PF
Sbjct:  953 NFTVTSKATDEDGDFAELYIFKWTALLIPPTTVLLVNLIGIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRINPF 1064          
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.516e-48
Identity = 88/128 (68.75%), Postives = 106/128 (82.81%), Query Frame = 3
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            +FTVTSK  D++ +F+ELY FKW           ++N +GVVAGVS AIN+GY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV+VWSILLASIFSLLWVR+DPF  +  GP +E+CG++C
Sbjct:  965 SFTVTSKGGDDE-EFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKNDGPLLEECGLDC 1091          
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.516e-48
Identity = 88/128 (68.75%), Postives = 106/128 (82.81%), Query Frame = 3
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            +FTVTSK  D++ +F+ELY FKW           ++N +GVVAGVS AIN+GY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV+VWSILLASIFSLLWVR+DPF  +  GP +E+CG++C
Sbjct:  965 SFTVTSKGGDDE-EFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKNDGPLLEECGLDC 1091          
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.516e-48
Identity = 88/128 (68.75%), Postives = 106/128 (82.81%), Query Frame = 3
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            +FTVTSK  D++ +F+ELY FKW           ++N +GVVAGVS AIN+GY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQNRTPTIV+VWSILLASIFSLLWVR+DPF  +  GP +E+CG++C
Sbjct:  966 SFTVTSKGGDDE-EFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKNDGPLLEECGLDC 1092          
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.006e-47
Identity = 87/114 (76.32%), Postives = 97/114 (85.09%), Query Frame = 3
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTT 344
            NFTVTSKASDEDGDF ELY+FKW           ++NLVG+VAGVSYAINSGYQSWGPL GKL FAFWV+ HLYPFLKGL+GRQNRTPTIV+VWS LLASIFSLLWVR++PF +
Sbjct:  940 NFTVTSKASDEDGDFAELYVFKWTSLLIPPTTILLVNLVGIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVS 1053          
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.927e-47
Identity = 88/129 (68.22%), Postives = 105/129 (81.40%), Query Frame = 3
Query:    3 NFTVTSKAS-DEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            NFTVTSKA+ DE   F ELY+FKW           +IN+VG+VAGVS A+N+GY SWGPLFGKLFF+FWVI+HLYPFLKGLMGRQNRTPTIVV+WSILLASIFSL+WVR+DPF  +  GP ++ CG++C
Sbjct:  935 NFTVTSKAAADETDAFGELYLFKWTTLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVILHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFIPKPKGPVLKPCGVSC 1063          
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.041e-44
Identity = 84/128 (65.62%), Postives = 105/128 (82.03%), Query Frame = 3
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            NFTVTSKA+D DG+F+ELY+FKW           +IN+VGV+ GVS AIN+GY SWGPLFG+LFFA WVIVHLYPFLKGL+G+Q+R PTI++VWSILLASI +LLWVRV+PF ++  GP +E CG++C
Sbjct:  961 NFTVTSKAAD-DGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLASILTLLWVRVNPFVSK-DGPVLEICGLDC 1086          
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 8.814e-44
Identity = 81/128 (63.28%), Postives = 105/128 (82.03%), Query Frame = 3
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            NFTVTSKA+D DG+F+ELY+FKW           +IN++GV+ G+S AI++GY SWGPLFG+LFFAFWVI+HLYPFLKGL+G+Q+R PTI++VWSILLASI +LLWVRV+PF  +  GP +E CG++C
Sbjct:  943 NFTVTSKAAD-DGEFSELYIFKWTSLLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1068          
BLAST of DN621524 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.504e-43
Identity = 81/128 (63.28%), Postives = 104/128 (81.25%), Query Frame = 3
Query:    3 NFTVTSKASDEDGDFTELYMFKWXXXXXXXXXXXVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 386
            NFTVTSKA+D DG+F++LY+FKW           +IN++GV+ GVS AI++GY SWGPLFG+LFFA WVI+HLYPFLKGL+G+Q+R PTI+VVWSILLASI +LLWVRV+PF  +  GP +E CG++C
Sbjct:  958 NFTVTSKAAD-DGEFSDLYLFKWTSLLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1083          
The following BLAST results are available for this feature:
BLAST of DN621524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CESA6_ORYSJ1.189e-4869.53Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA1_ARATH2.648e-4876.79Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESA5_ORYSJ4.516e-4868.75Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI4.516e-4868.75Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA3_ORYSJ4.516e-4868.75Probable cellulose synthase A catalytic subunit 3 ... [more]
CESAA_ARATH1.006e-4776.32Probable cellulose synthase A catalytic subunit 10... [more]
CESA7_ORYSJ2.927e-4768.22Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA9_ARATH1.041e-4465.63Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA5_ARATH8.814e-4463.28Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA6_ARATH1.504e-4363.28Cellulose synthase A catalytic subunit 6 [UDP-form... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06N08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621524 ID=DN621524; Name=DN621524; organism=Citrus sinensis; type=EST; length=663bp
CCAACTTCACTGTCACCTCCAAGGCATCAGATGAAGACGGAGATTTTACT
GAGCTCTATATGTTCAAATGGACAACACTACTTATTCCACCAACAACTCT
TCTTGTCATAAACTTGGTTGGCGTAGTTGCGGGTGTCTCGTATGCCATCA
ACAGCGGTTATCAATCATGGGGTCCTCTCTTTGGTAAGCTATTCTTTGCC
TTTTGGGTGATCGTCCATCTTTACCCCTTCCTCAAAGGTTTGATGGGACG
CCAAAACCGGACACCCACCATTGTTGTCGTGTGGTCAATTCTCCTTGCCT
CCATATTCTCTTTACTATGGGTGCGAGTTGATCCCTTTACCACCAGAGTC
ACTGGTCCTGATGTCGAGCAATGTGGAATCAACTGCTGACAAATAGTGGC
TGGATTTCAGAAAAATTGTTTTGGTCTCAAGTCTAAAAGGTGGGGAATCA
CTGAAGTTCATGATTTTGCCTCCTCTTCCTGTCAGTGAACTTGTTTGTGT
ATGTGAACTTGTTTTTGTGTATGTGAATTCGCATCTTGTGCAGGATACAT
ATATTTATATATCTATAGGTGGTGAAAACTACAAAAATGGCGTTGTTGTT
TATTTTGGAGAATCTGGAAGATTAGATTATTCTATTTTAATTGATACATG
TAATCAAGCATAC
back to top