DN621436

Overview
NameDN621436
Unique NameDN621436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.670e-37
Identity = 76/150 (50.67%), Postives = 105/150 (70.00%), Query Frame = 1
Query:  223 PKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            P  L+  +   T T    +   PET+++ L NGLRVA+E + +  T TVGVWID GSRFET++ NG  +FLEH+ FKGT+ R    LE+E+E+MG HLNAY++RE T YY K L KD+  A+++L DI+QN + + ++I +ERDVILREM
Sbjct:   24 PALLRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQS-SQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVILREM 172          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.181e-37
Identity = 76/150 (50.67%), Postives = 107/150 (71.33%), Query Frame = 1
Query:  223 PKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            P  L+  +   T T    + + PET+++ L NGLRVA+E +  A T TVGVWIDAGSR+ET++ NG  +FLEH+ FKGT+ R    LE+E+E++G HLNAY++RE T Y  K L KD+   +++LADI+QNS+ + ++I +ERDVILREM
Sbjct:   24 PALLRLPALRGTATFAQALQSVPETQVSILDNGLRVASEQSSHA-TCTVGVWIDAGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNSSLEDSQIEKERDVILREM 172          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.347e-37
Identity = 73/150 (48.67%), Postives = 107/150 (71.33%), Query Frame = 1
Query:  223 PKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            P  L+      T T    + + PET+++ L NGLRVA+E + +  T TVGVWIDAGSR+E+++ NG  +F+EH+ FKGT+ R    LE+E+E+MG HLNAY++RE T YY K L KD+  A+++LADI+QN + + ++I +ERDVIL+E+
Sbjct:   24 PALLRSSDLRGTATYAQALQSVPETQVSQLDNGLRVASEQS-SQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQEL 172          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.412e-36
Identity = 74/127 (58.27%), Postives = 94/127 (74.02%), Query Frame = 1
Query:  289 PETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRE 669
            P T+ + LPNGL +ATE      +ATVG+++DAGSR E  + NGTAHFLEH+ FKGT+ R+ + +E EIEN+G HLNAYTSRE T YYAK L +D+  A+DIL+DIL  S  D + I RERDVI+RE
Sbjct:   24 PGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRSQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRE 150          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.373e-36
Identity = 73/150 (48.67%), Postives = 105/150 (70.00%), Query Frame = 1
Query:  223 PKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            P  L+  +   T T    + + PET+++ L NGLRVA+E + +  T TVGVWID GSR+ET++ NG  +FLEH+ FKGT+ R    LE+E+E++G HLNAY++RE T Y  K L KD+   +++LADI+QN + + ++I +ERDVILREM
Sbjct:   24 PALLRLPALRGTATFVQALQSVPETQVSVLDNGLRVASEQS-SHPTCTVGVWIDVGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNISLEDSQIEKERDVILREM 172          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.042e-35
Identity = 79/139 (56.83%), Postives = 94/139 (67.63%), Query Frame = 1
Query:  253 PTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRE 669
            P L       A P+T+ TTL NGL VATE +  A+TATV V +DAGSR ET + NG AHFLEH+ FKGT+ R+ + LE E EN G HLNAYTSREQT YYA      V NA+ +LADIL NS+   + + RER VILRE
Sbjct:    8 PKLVRRFATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISASAVERERQVILRE 146          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: QCR1_EUGGR (Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.120e-33
Identity = 75/129 (58.14%), Postives = 89/129 (68.99%), Query Frame = 1
Query:  283 AAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRE 669
            AA  T    LPNG R+A+ES     T TVGVWIDAGSR+ET++ NG AHFLEHM FKGT KR+ +D+E  +E MG HLNAYTSRE T YY K   KDV  A+DILADIL NS   +  +  ER  I++E
Sbjct:   23 AARPTLQNALPNGFRIASESK-DGDTCTVGVWIDAGSRWETEKNNGVAHFLEHMNFKGTGKRSRQDIEFGMEKMGAHLNAYTSREHTCYYVKCFKKDVPEAVDILADILLNSKRTEQDLDAERQTIVQE 150          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: YMXG_BACSU (Uncharacterized zinc protease ymxG OS=Bacillus subtilis GN=ymxG PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.789e-31
Identity = 60/122 (49.18%), Postives = 87/122 (71.31%), Query Frame = 1
Query:  307 TLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            T  NG+R+  E+N   ++  +GVWI  GSR ET E NG +HFLEHM FKGT  ++AR++ E  + +GG +NA+TS+E T YYAKVLD+  N ALD+LAD+  +STFD+  + +E++V+  E+
Sbjct:    6 TCQNGVRIVLENNPTVRSVAIGVWIGTGSRHETPEINGISHFLEHMFFKGTSTKSAREIAESFDRIGGQVNAFTSKEYTCYYAKVLDEHANYALDVLADMFFHSTFDENELKKEKNVVYEEI 127          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: UCR1_CAEEL (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Caenorhabditis elegans GN=ucr-1 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.815e-30
Identity = 64/132 (48.48%), Postives = 91/132 (68.94%), Query Frame = 1
Query:  277 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            + +AP+ ++TTL NG RV TE N +A TATVGVWI+ GSRFE ++ NG AHFLE +I KGT KR +  LE E+  +G  LN++T R+QT  + +   +DV   +DILAD+L+NS  + + I  ER  +L+E+
Sbjct:   32 LASAPQAEVTTLKNGFRVVTEDNGSA-TATVGVWIETGSRFENEKNNGVAHFLERLIHKGTGKRASAALESELNAIGAKLNSFTERDQTAVFVQAGAQDVEKVVDILADVLRNSKLEASTIDTERVNLLKEL 162          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: Y855_MYCLE (Uncharacterized zinc protease ML0855 OS=Mycobacterium leprae GN=ML0855 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.157e-28
Identity = 61/123 (49.59%), Postives = 83/123 (67.48%), Query Frame = 1
Query:  304 TTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            TTLP GLRV TE   A ++A+VGVW+  GSR E     G AHFLEH++FK T  RTA D+ + I+ +GG LNA+T++E T YYA VLD D+  A+D++AD++ N       +  ERDV+L E+
Sbjct:   25 TTLPGGLRVVTEHLPAVRSASVGVWVGVGSRDEGATVAGAAHFLEHLLFKSTSTRTAMDIAQAIDAVGGELNAFTAKEHTCYYAHVLDSDLELAVDLVADVVLNGRCAVDDVELERDVVLEEI 147          
The following BLAST results are available for this feature:
BLAST of DN621436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
QCR1_HUMAN1.670e-3750.67Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_MOUSE2.181e-3750.67Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_BOVIN6.347e-3748.67Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_YEAST2.412e-3658.27Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_RAT5.373e-3648.67Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_SCHPO2.042e-3556.83Probable mitochondrial-processing peptidase subuni... [more]
QCR1_EUGGR1.120e-3358.14Ubiquinol-cytochrome-c reductase complex core prot... [more]
YMXG_BACSU1.789e-3149.18Uncharacterized zinc protease ymxG OS=Bacillus sub... [more]
UCR1_CAEEL9.815e-3048.48Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
Y855_MYCLE3.157e-2849.59Uncharacterized zinc protease ML0855 OS=Mycobacter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06L08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621436 ID=DN621436; Name=DN621436; organism=Citrus sinensis; type=EST; length=673bp
GTCCAAACGATGGCGTTTAAGCATCTCCTAACCCTAGCTCGCCGGTCTCA
CAGGCCTTCGTCCACGGCCCTCTTTACCGCCATCCGATCCTCCTCCTCCG
CCTCACCCCTCGCCACGTCACCATCGTCTCCGCCGCCGTCCCCGCCTCCC
CCAAATGTCATGATCTACGACCGTCTCGCCGAAGCCGTCAAAGCCAAGCT
CAAAAACCTAGAAAACCCCGACCCGAAGTTCTTAAAGTACGGATCCCCGC
ACCCAACCCTTACTTCCCACACGCACATCCTCGCCGCGCCGGAGACCAAA
ATCACGACTTTGCCTAACGGACTCCGCGTCGCCACCGAGTCGAACCTCGC
CGCGAAGACGGCCACAGTTGGAGTTTGGATTGACGCCGGCTCGAGGTTCG
AGACTGATGAGACGAACGGGACGGCTCATTTCTTGGAGCATATGATATTC
AAGGGGACGGAGAAGCGGACTGCGAGAGATTTGGAGGAGGAGATCGAGAA
TATGGGGGGGCATTTGAATGCTTACACTAGCAGGGAACAGACGACCTATT
ATGCCAAGGTGTTGGATAAGGATGTGAATAATGCTTTGGATATTTTGGCA
GATATTTTGCAGAACTCGACGTTTGATCAAGCGAGGATCACCAGGGAACG
GGATGTTATTTTGAGAGAAATGG
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