DN621436

Overview
NameDN621436
Unique NameDN621436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  292 ETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            +T+ITTL NGL+VA+E+++    A++G+++D GS +ET  + G  H LE M FK T  R+   +  EIE +GG++ A  SRE   Y    L   V   +++LAD ++N  F    +  + + +  E+
Sbjct:   74 KTQITTLANGLKVASEASVNP-AASIGLYVDCGSIYETPASYGATHLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVRNPAFLDWEVKEQLEKVKAEI 199          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  298 KITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRE 648
            +ITTLPNGL++A+E+      A++G+++D GS +E    +G  H LE M FK T  RT   L  EIE +GG+ +A  SREQ +Y    L   V   +++L D ++N  F    +  E
Sbjct:   79 QITTLPNGLKIASETT-PNPAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEE 194          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPA_YEAST (Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae GN=MAS2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  268 HTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQ 612
            +++I      K+++L NGL+VAT SN     + +G++IDAGSRFE     G  H L+ + FK TE    R + E +E +GG+    +SRE   Y A V ++DV   L ++++ ++
Sbjct:   10 YSNIARTDNFKLSSLANGLKVAT-SNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVR 123          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPA_MOUSE (Mitochondrial-processing peptidase subunit alpha OS=Mus musculus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  292 ETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARD-LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            ETK+TTL NGLRVA++ N   +  TVG+ I++GSR+E    +G AHFLE + F  T +  ++D +   +E  GG  +  TSR+ T Y      K ++  +D+LAD++ +       I   R  +  E+
Sbjct:   65 ETKVTTLDNGLRVASQ-NKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVDLLADVVLHPRLTDEEIEMTRMAVQFEL 191          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPA_BOVIN (Mitochondrial-processing peptidase subunit alpha OS=Bos taurus GN=PMPCA PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  292 ETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARD-LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            ETK+TTL NGLRVA++ N   +  TVG+ I++GSR+E    +G AHFLE + F  TE+  ++D +   +E  GG  +  TSR+ T Y      K ++  + +LAD++ +       I   R  +  E+
Sbjct:   66 ETKVTTLDNGLRVASQ-NKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTERFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVGLLADVVLHPRLTDEEIEMARMAVQFEL 192          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: Y4WA_RHISN (Uncharacterized zinc protease y4wA OS=Rhizobium sp. (strain NGR234) GN=NGR_a01040 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 41/120 (34.17%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  310 LPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRE 669
            L NG+ V    +  A   T  +W   G+  E    +G AHFLEH++FKGT+K  + +   +I  +GG  NA+T  + T Y+  V  + +   ++  AD +++     A I  ERDVIL E
Sbjct:   92 LGNGMEVVVIPDHRAPIVTQMIWYKVGNADEPPGKSGIAHFLEHLMFKGTKKHPSGEFSAKIAEIGGEENAFTGSDYTAYHQTVTPESLRTMMEFEADRMRHLVLTDAVIVPERDVILEE 211          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: YL233_MIMIV (Putative zinc protease L233 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L233 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  307 TLPNGLR-VATESNLAAKTATVGVWIDAGSRFETDE-TNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            TL NGL+ V    N       +G ++  GSR E     NG +HFLEHM+FK T  +++ +L  E+++ G + NA T+ + T Y+       ++  LDI+ DI  +  F    I RER VI+ EM
Sbjct:    7 TLKNGLKLVFVPMNNDIPLVAMGFYVGVGSRNEFGAYKNGISHFLEHMMFKRTTNKSSDELFSELDSTGANYNAITTTQNTCYFLSGNSNYIDKLLDIMLDIFLHPNFVSDDIERERKVIMEEM 130          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPA_PONAB (Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  292 ETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARD-LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADIL--QNSTFDQARITR 645
            ETK+TTL NGLRVA++ N   +  TVG+ I++GSR+E    +G AHFLE + F  T +  ++D +   +E  GG  +  TSR+ T Y      K ++  + +LAD++     T ++  +TR
Sbjct:   66 ETKVTTLDNGLRVASQ-NKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVGLLADVVLQPRLTDEEVEMTR 185          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPA_RAT (Mitochondrial-processing peptidase subunit alpha OS=Rattus norvegicus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 1
Query:  292 ETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARD-LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREM 672
            ETK+TTL NGLRVA++ N   +  T+G+ I++GSR+E    +G AHFLE + F  T +  ++D +   +E  GG  +  TSR+ T Y      K ++  + +LAD++ +       I   R  +  E+
Sbjct:   65 ETKVTTLDNGLRVASQ-NKFGQFCTLGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVGLLADVVLHPRLTDEEIEMTRMAVQFEL 191          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPA_HUMAN (Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  292 ETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARD-LEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADIL--QNSTFDQARITR 645
            ETK+TTL NGLRVA++ N   +  TVG+ I++GSR+E    +G AHFLE + F  T +  ++D +   +E  GG  +  TSR+ T Y      K ++  + +LAD++     T ++  +TR
Sbjct:   66 ETKVTTLDNGLRVASQ-NKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVALLADVVLQPRLTDEEVEMTR 185          
The following BLAST results are available for this feature:
BLAST of DN621436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
MPPA_SOLTU3.065e-1535.43Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_ARATH3.065e-1538.46Probable mitochondrial-processing peptidase subuni... [more]
MPPA_YEAST1.521e-1435.65Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_MOUSE1.521e-1435.94Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_BOVIN1.987e-1435.94Mitochondrial-processing peptidase subunit alpha O... [more]
Y4WA_RHISN2.595e-1434.17Uncharacterized zinc protease y4wA OS=Rhizobium sp... [more]
YL233_MIMIV1.682e-1336.29Putative zinc protease L233 OS=Acanthamoeba polyph... [more]
MPPA_PONAB1.682e-1337.19Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_RAT2.197e-1334.38Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_HUMAN2.197e-1337.19Mitochondrial-processing peptidase subunit alpha O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06L08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621436 ID=DN621436; Name=DN621436; organism=Citrus sinensis; type=EST; length=673bp
GTCCAAACGATGGCGTTTAAGCATCTCCTAACCCTAGCTCGCCGGTCTCA
CAGGCCTTCGTCCACGGCCCTCTTTACCGCCATCCGATCCTCCTCCTCCG
CCTCACCCCTCGCCACGTCACCATCGTCTCCGCCGCCGTCCCCGCCTCCC
CCAAATGTCATGATCTACGACCGTCTCGCCGAAGCCGTCAAAGCCAAGCT
CAAAAACCTAGAAAACCCCGACCCGAAGTTCTTAAAGTACGGATCCCCGC
ACCCAACCCTTACTTCCCACACGCACATCCTCGCCGCGCCGGAGACCAAA
ATCACGACTTTGCCTAACGGACTCCGCGTCGCCACCGAGTCGAACCTCGC
CGCGAAGACGGCCACAGTTGGAGTTTGGATTGACGCCGGCTCGAGGTTCG
AGACTGATGAGACGAACGGGACGGCTCATTTCTTGGAGCATATGATATTC
AAGGGGACGGAGAAGCGGACTGCGAGAGATTTGGAGGAGGAGATCGAGAA
TATGGGGGGGCATTTGAATGCTTACACTAGCAGGGAACAGACGACCTATT
ATGCCAAGGTGTTGGATAAGGATGTGAATAATGCTTTGGATATTTTGGCA
GATATTTTGCAGAACTCGACGTTTGATCAAGCGAGGATCACCAGGGAACG
GGATGTTATTTTGAGAGAAATGG
back to top