DN621436

Overview
NameDN621436
Unique NameDN621436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPA1_DICDI (Mitochondrial-processing peptidase subunit alpha-1 OS=Dictyostelium discoideum GN=mppA1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 38/125 (30.40%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  292 ETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILR 666
            + +I+TLPNG+RV ++       A +G++I+AG+++E+ +  G  + LE M FK T+  +  ++ +E+E +  +  A +SRE      +VL KD+   L IL+D +++ T+ +  +  + +V +R
Sbjct:  143 KAEISTLPNGIRVVSKQTHEGVCA-IGLYINAGTKYESPQDRGVFNLLEKMTFKETKNNSTSEIIKELEEISMNAMASSSREMINVSLEVLRKDLEFVLSILSDQIKSPTYSEEELREQIEVCIR 266          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPA_BLAEM (Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.424e-12
Identity = 43/129 (33.33%), Postives = 64/129 (49.61%), Query Frame = 1
Query:  283 AAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRE 669
            AA  T +T LP+G+RVAT  +  +  A VGV++DAG  +ET    G +HF+  + FK T   T   + + +  +GG+L    +RE   Y   VL  D+   + +LAD        +  I   R  I  E
Sbjct:   11 AARSTCMTRLPSGIRVATAPS-NSHFAAVGVYVDAGPIYETSIDRGVSHFVSSLAFKSTHGATESQVLKTMAGLGGNLFCTATRESILYQGSVLHHDLPRTVQLLADTTLRPALTEEEIAERRATIAFE 138          
BLAST of DN621436 vs. ExPASy Swiss-Prot
Match: MPPA_SCHPO (Probable mitochondrial-processing peptidase subunit alpha OS=Schizosaccharomyces pombe GN=mas2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 38/129 (29.46%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  283 AAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRE 669
            A  E +   L NG+    +       + +GV++ AGSR+ET + +G +HF++ + F+ TE+    +++ ++EN+GG+    TSRE   Y A V + DV +   +LA+ +      +  +   RD I+ E
Sbjct:   42 ALNEVRTEKLKNGVTYVCDPR-PGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYE 169          
The following BLAST results are available for this feature:
BLAST of DN621436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
MPPA1_DICDI4.894e-1330.40Mitochondrial-processing peptidase subunit alpha-1... [more]
MPPA_BLAEM1.424e-1233.33Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_SCHPO2.429e-1229.46Probable mitochondrial-processing peptidase subuni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06L08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621436 ID=DN621436; Name=DN621436; organism=Citrus sinensis; type=EST; length=673bp
GTCCAAACGATGGCGTTTAAGCATCTCCTAACCCTAGCTCGCCGGTCTCA
CAGGCCTTCGTCCACGGCCCTCTTTACCGCCATCCGATCCTCCTCCTCCG
CCTCACCCCTCGCCACGTCACCATCGTCTCCGCCGCCGTCCCCGCCTCCC
CCAAATGTCATGATCTACGACCGTCTCGCCGAAGCCGTCAAAGCCAAGCT
CAAAAACCTAGAAAACCCCGACCCGAAGTTCTTAAAGTACGGATCCCCGC
ACCCAACCCTTACTTCCCACACGCACATCCTCGCCGCGCCGGAGACCAAA
ATCACGACTTTGCCTAACGGACTCCGCGTCGCCACCGAGTCGAACCTCGC
CGCGAAGACGGCCACAGTTGGAGTTTGGATTGACGCCGGCTCGAGGTTCG
AGACTGATGAGACGAACGGGACGGCTCATTTCTTGGAGCATATGATATTC
AAGGGGACGGAGAAGCGGACTGCGAGAGATTTGGAGGAGGAGATCGAGAA
TATGGGGGGGCATTTGAATGCTTACACTAGCAGGGAACAGACGACCTATT
ATGCCAAGGTGTTGGATAAGGATGTGAATAATGCTTTGGATATTTTGGCA
GATATTTTGCAGAACTCGACGTTTGATCAAGCGAGGATCACCAGGGAACG
GGATGTTATTTTGAGAGAAATGG
back to top