DN621435

Overview
NameDN621435
Unique NameDN621435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.701e-37
Identity = 75/182 (41.21%), Postives = 115/182 (63.19%), Query Frame = -3
Query:  212 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 757
            PD++ L V  A++G ++    GG H+ S LA     N++ +S   F+  Y +TGL G + V     +DD+ + +  +  +L    +E++V R +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDAS V+ + +++IYD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct:  299 PDNVALQVANAIIGHYDCTYGGGVHLSSPLASGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVARGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDASVVREICSKYIYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.900e-36
Identity = 74/181 (40.88%), Postives = 114/181 (62.98%), Query Frame = -3
Query:  215 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 757
            PD   L ++Q M+G+WN+    GK++ S L + V   ++AES   F T Y+DTGLFG Y V +P+ +DDL   ++ E  ++A   ++ +V R + +L ++ L+  DGTS V E IGRQ+LT GRR+   E++ RI+ +  + V+RVA+  + D   A+ A+GPI   PDYN+ +  TYWNR
Sbjct:  288 PDYFVLELIQTMIGNWNRGIAAGKNIASNLGEIVATEDLAESYSTFFTCYQDTGLFGNYGVCQPERVDDLVAEMLKEWQRIATSCNKNEVERNKQKLLATTLMQYDGTSKVCEGIGRQILTLGRRLSPFEVYTRINEITVADVQRVASTLLRDVSPAVTAIGPIANYPDYNFVKGWTYWNR 468          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.135e-35
Identity = 83/170 (48.82%), Postives = 120/170 (70.59%), Query Frame = -3
Query:  248 DSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVA-KPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDY 754
            D  T +V QA++G+++K      H GS+L+  V  +++A S M+F+T+Y DTGL+G+Y V  K D +DDL +  + E T+L   VSEA+V RA+ QLK+S+LL +DGT+ VAEDIGRQ++T GRR+  AE+   ID+V A  V   AN+ I+D+DIAI+A+G I+GL DY
Sbjct:  295 DYFTGLVTQAIVGNYDKALGNAPHQGSKLSGFVHKHDLATSFMSFSTSYSDTGLWGIYLVTDKLDRVDDLVHFSLREWTRLCSNVSEAEVERAKAQLKASILLSLDGTTAVAEDIGRQIVTTGRRMSPAEIERIIDAVSAKDVMDFANKKIWDQDIAISAVGSIEGLFDY 464          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.355e-35
Identity = 72/175 (41.14%), Postives = 117/175 (66.86%), Query Frame = -3
Query:  236 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDC-LDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFR 757
            PD   +MVMQ++ G+W+++      + S L+  +  N +A S M+F+T+Y DTGL+G+Y V++    LDD  +  + E T+++   +E +V RA++QLK+ LLL +DGT+ VAEDIGRQ++T G+R+  A++   +D+V    +KRVA ++++D+D A+AA G I GL DY   R
Sbjct:  284 PDYFPMMVMQSIFGNWDRSLGASSLLSSRLSHIISSNSLANSFMSFSTSYSDTGLWGIYLVSENLMNLDDTLHFTLKEWTRMSIAPTEGEVERAKSQLKAGLLLSLDGTTAVAEDIGRQIVTSGKRMTPAQIENAVDAVSVDDIKRVAQKYLWDKDFALAAFGNIDGLKDYGRIR 458          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.140e-34
Identity = 78/183 (42.62%), Postives = 118/183 (64.48%), Query Frame = -3
Query:  212 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 757
            PD  T +VMQA++G+W++      H+ S L+  V  +++A S M+F+T+Y DTGL+G+Y V +    +DDL +  +    +L    + A+V RA+ QL++SLLL +D T+ +AEDIGRQLLT GRR+   E+  RI  +    V RVA+  I+D+DIA++A+G I+GL DYN  R     NR+
Sbjct:  276 PDYFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARLTV-ATRAEVERAKAQLRASLLLSLDSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSAVGSIEGLLDYNRIRSSISMNRW 457          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: UCR1_CAEEL (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Caenorhabditis elegans GN=ucr-1 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.186e-22
Identity = 57/183 (31.15%), Postives = 95/183 (51.91%), Query Frame = -3
Query:  215 DSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDD---LAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 754
            D++ L +    +G W+      +   S L Q++G +    ++  FN NYKDTGLFG+Y VA    L+D   +  ++ +E   LA   +E +V  A+NQ +++L  +++  +  A    ++LL  G     +EL A+I  VDA  V+   +R +YDRD+A   +G  +  P+Y   R    W R
Sbjct:  288 DALALQIANQFIGQWDVTHATSRTAASRLVQKIGHDHGVHNLQHFNINYKDTGLFGIYFVADAHDLNDTSGIMKSVAHEWKHLASAATEEEVAMAKNQFRTNLYQNLETNTQKAGFNAKELLYTGNLRQLSELEAQIQKVDAGAVREAISRHVYDRDLAAVGVGRTEAFPNYALTRAGMSWWR 470          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 57/182 (31.32%), Postives = 106/182 (58.24%), Query Frame = -3
Query:  230 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGIN-EIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTK-----LAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRR 757
            PD    +  QA++G+W++    G +  S LA     N  +A S M+F+T+Y D+GL+G+Y V   D  +     I+ E  K      + ++S+A+V RA+ QLK++LLL +DG++ + EDIGRQ++T G+R+   E+F ++D +    +   AN  + ++ +++ A+G    +P+ ++   +
Sbjct:  280 PDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVT--DSNEHNVQLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEK 459          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPA_YEAST (Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae GN=MAS2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.377e-17
Identity = 55/155 (35.48%), Postives = 88/155 (56.77%), Query Frame = -3
Query:  317 PDSMTLMVMQAMLGSWNKNSVGG--KHMGSELAQRVGINE--IAESMMAFNTNYKDTGLFGV----YAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVA 757
            PD   L  +Q +LG     S GG  K M S L   V +N+    E+ +AFN +Y D+G+FG+       A P  ++ +A  +         R++E +V+RA+NQLKSSLL++++      ED+GRQ+L +GR+IP  E+ ++I+ +    + RVA
Sbjct:  271 PDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHV-LNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVA 424          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: QCR1_EUGGR (Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.104e-17
Identity = 52/172 (30.23%), Postives = 92/172 (53.49%), Query Frame = -3
Query:  305 PDSMTLMVMQAMLGSWNKNSVGGKHMGSELA----------------QRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCL-----DDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFI 757
            PD++ + V++ +LGS++++     +     A                 + G N I  S+ AF   Y D GL G YA+A+P        +++ +  M E  +++  +SE +  RA+NQLK   +L +DGT+ +A+DIGRQ+L++G R+P A  F ++D++    + RV  R +
Sbjct:  275 PDAIKIKVLEQLLGSYSRDKGEAAYSCFARAIVMDFYDPKVGQFFRPNKAGHNPI-HSLNAFWAPYSDVGLLGFYAIAEPGKSYGHEWENILHYAMRELIRVSRNISEEEFERAKNQLKLQTMLQLDGTTNIADDIGRQVLSFGARVPLASFFEQLDAISREDLIRVGPRVL 445          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.032e-17
Identity = 58/176 (32.95%), Postives = 90/176 (51.14%), Query Frame = -3
Query:  245 DSMTLMVMQAMLGSWNKNSVGG--KHMGSELAQRVGINEIAE--SMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY--RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYN 754
            +SMTL V+Q ++G     S GG  K M S L  RV +N+  +  +  AF++ Y +TGLFG+      D         + E   +A    V +  + RA+   KS++L++++     +EDIGRQLLTYG R P       ID+V A  +  V  + I    + +A+ G +  LP Y+
Sbjct:  322 ESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYLRV-LNQYPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQLNRAKQATKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLI-SSPLTMASYGDVLSLPSYD 495          
The following BLAST results are available for this feature:
BLAST of DN621435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
QCR1_HUMAN2.701e-3741.21Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_DICDI3.900e-3640.88Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_NEUCR1.135e-3548.82Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_LENED7.355e-3541.14Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_SCHPO2.140e-3442.62Probable mitochondrial-processing peptidase subuni... [more]
UCR1_CAEEL4.186e-2231.15Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_YEAST6.045e-2131.32Mitochondrial-processing peptidase subunit beta OS... [more]
MPPA_YEAST2.377e-1735.48Mitochondrial-processing peptidase subunit alpha O... [more]
QCR1_EUGGR3.104e-1730.23Ubiquinol-cytochrome-c reductase complex core prot... [more]
MPPA_SOLTU9.032e-1732.95Mitochondrial-processing peptidase subunit alpha O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06L08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621435 ID=DN621435; Name=DN621435; organism=Citrus sinensis; type=EST; length=759bp
CCCTTTTTTTTGGAGAGTGAAGACAGCTTACTTATTTCCTGAACAAATTA
TGAAGTTACAGAAGCAAGAGCTAGAAAAGAATTCAATAAAATACCATAGC
CCTGAAGCCTCTCCCAAGGGCATTGATTGTGTAAATTGCAACCCAAAAAT
TGTTTGAAATCTCCGCCCAGGAAGGCGGGGATGCAGTAATGAACAACCAT
GAGATAACTTAGTATCTATTCCAGTAGGTTCTGCGTCTGAACCAGTTGTA
GTCGGGTAAACCTTGAATTGGACCCATTGCAGCAATTGCGATATCCCTGT
CGTAAATAAATCTGTTTGCAACGCGCTTGACAGTGCTTGCATCTACGGAG
TCTATCCTAGCAAACAATTCAGCAAATGGGATTCTTCGACCATATGTAAG
CAGCTGGCGTCCAATATCTTCAGCTACAGGGCTTGTTCCATCAATGTGAA
GCAACAGGGATGATTTCAACTGATTACGGGCACGAGTGACATCAGCTTCT
GAAACCCGATAAGCTAACTTGGTAGTCTCGTACATAATTGCATAGGCCAA
ATCATCTAAGCAATCCGGCTTAGCAACAGCATAAACACCAAACAGACCAG
TGTCTTTGTAGTTCGTGTTGAAGGCCATCATGCTTTCTGCAATTTCATTA
ATGCCAACTCTCTGTGCCAGCTCGGAACCCATGTGCTTTCCACCCACTGA
ATTTTTATTCCATGAACCCAACATTGCCTGCATAACCATCAAGGTCATTG
AATCTGGAT
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