DN621435

Overview
NameDN621435
Unique NameDN621435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: MPPA_HUMAN (Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 53/175 (30.29%), Postives = 90/175 (51.43%), Query Frame = -3
Query:  248 DSMTLMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNT-----NYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDY 754
            D +   V+  M+G     S GG   G  +  R+ +N +      +N      +Y+DTGL  ++A A P  + ++   I  E   +   V   ++ RA+ QL S L+++++    + ED+GRQ+L T  R++P  EL   I +V    VKRVA++ +  +  A+AA+G +  LP Y
Sbjct:  333 DFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPH-ELCTLIRNVKPEDVKRVASKMLRGKP-AVAALGDLTDLPTY 503          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: Y338_RICFE (Uncharacterized zinc protease RF_0338 OS=Rickettsia felis GN=RF_0338 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 43/142 (30.28%), Postives = 78/142 (54.93%), Query Frame = -3
Query:  269 GKHMGSELAQRVGIN-EIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGP 691
            G  M S L Q +     +A ++ ++N+ Y D+G+F +YA    D L+ L   +  E TK+  +V+E ++ RA+ QL+S+LL+  +  +  +E+IG+    +G+ IP  E+   I ++ A  +   AN+ I+      A +GP
Sbjct:  266 GGGMSSRLFQHIREKLGLAYAVGSYNSTYSDSGVFTIYASTAHDKLELLYKELKTEITKMTEKVNEEEMIRAKTQLRSNLLMAQEKVAYKSEEIGKNYAAFGKYIPPEEIMEIITNIKADDIINTANK-IFSSITTSAIIGP 406          
BLAST of DN621435 vs. ExPASy Swiss-Prot
Match: QCR2_HUMAN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 46/163 (28.22%), Postives = 84/163 (51.53%), Query Frame = -3
Query:  254 VMQAMLGSWNKNSVGGKHMGSELAQRVG-INEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLP 736
            V+Q +LG+   +   G +  S L Q V    +    + AFN +Y D+GLFG+Y +++     D+  A   +   +A   +S  DV  A+N+LK+  L+ ++ +    E++G Q L  G  +P + +  +IDSV  + +   A +F+  +  ++AA G +   P
Sbjct:  288 VLQHVLGA-GPHVKRGSNTTSHLHQAVAKATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSECFLEEVGSQALVAGSYMPPSTVLQQIDSVANADIINAAKKFVSGQK-SMAASGNLGHTP 448          
The following BLAST results are available for this feature:
BLAST of DN621435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
MPPA_HUMAN3.552e-1330.29Mitochondrial-processing peptidase subunit alpha O... [more]
Y338_RICFE1.492e-1130.28Uncharacterized zinc protease RF_0338 OS=Rickettsi... [more]
QCR2_HUMAN5.671e-1128.22Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06L08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621435 ID=DN621435; Name=DN621435; organism=Citrus sinensis; type=EST; length=759bp
CCCTTTTTTTTGGAGAGTGAAGACAGCTTACTTATTTCCTGAACAAATTA
TGAAGTTACAGAAGCAAGAGCTAGAAAAGAATTCAATAAAATACCATAGC
CCTGAAGCCTCTCCCAAGGGCATTGATTGTGTAAATTGCAACCCAAAAAT
TGTTTGAAATCTCCGCCCAGGAAGGCGGGGATGCAGTAATGAACAACCAT
GAGATAACTTAGTATCTATTCCAGTAGGTTCTGCGTCTGAACCAGTTGTA
GTCGGGTAAACCTTGAATTGGACCCATTGCAGCAATTGCGATATCCCTGT
CGTAAATAAATCTGTTTGCAACGCGCTTGACAGTGCTTGCATCTACGGAG
TCTATCCTAGCAAACAATTCAGCAAATGGGATTCTTCGACCATATGTAAG
CAGCTGGCGTCCAATATCTTCAGCTACAGGGCTTGTTCCATCAATGTGAA
GCAACAGGGATGATTTCAACTGATTACGGGCACGAGTGACATCAGCTTCT
GAAACCCGATAAGCTAACTTGGTAGTCTCGTACATAATTGCATAGGCCAA
ATCATCTAAGCAATCCGGCTTAGCAACAGCATAAACACCAAACAGACCAG
TGTCTTTGTAGTTCGTGTTGAAGGCCATCATGCTTTCTGCAATTTCATTA
ATGCCAACTCTCTGTGCCAGCTCGGAACCCATGTGCTTTCCACCCACTGA
ATTTTTATTCCATGAACCCAACATTGCCTGCATAACCATCAAGGTCATTG
AATCTGGAT
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