DN621420

Overview
NameDN621420
Unique NameDN621420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.136e-15
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = -2
Query:  243 VMALEEVVQAAKGR-----VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 497
            V  L EV+   K R     + +F+DGGVRRGTDV KAL LGA GV +GRP  ++++  G+ GV K +Q+L+DE E+ M L G   ++E+T
Sbjct:  444 VEVLAEVMPILKERGLDQKIDIFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYAMSSYGDKGVTKAIQLLKDEIEMNMRLLGVNKIEELT 533          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPK (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain KT2440) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.361e-14
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LAV G+AGV+ +L++   E  + M L+G +S+ EITR+ +V
Sbjct:  289 ALPAIADAVKGDLKILADSGIRSGLDVVRMIALGADTVLIGRAFLYALAVHGQAGVKNLLELFEKEMRVAMVLTGAKSISEITRDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPG (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain GB-1) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.361e-14
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LAV G+AGV+ +L++   E  + M L+G +S+ EITR+ +V
Sbjct:  289 ALPAIADAVKGDLKILADSGIRSGLDVVRMIALGADTVLIGRAFLYALAVHGQAGVKNLLELFEKEMRVAMVLTGAKSISEITRDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_PSEP1 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.361e-14
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LAV G+AGV+ +L++   E  + M L+G +S+ EITR+ +V
Sbjct:  289 ALPAIADAVKGDLKILADSGIRSGLDVVRMIALGADTVLIGRAFLYALAVHGQAGVKNLLELFEKEMRVAMVLTGAKSISEITRDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.361e-14
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = -2
Query:  246 KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEI 464
            K ++ VF+DGGVRRGTDV KAL LGA GV +GRP  ++ +  G  GV K +++LRDE E++M L G  S+ E+
Sbjct:  481 KDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAEL 553          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_PSEE4 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas entomophila (strain L48) GN=lldD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.028e-14
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV+ +L +   E  + M L+G +S+ EITR+ +V
Sbjct:  289 ALPAIADAVKGDIKILADSGIRSGLDVVRMIALGADTVLIGRAFLYALATHGEAGVKNLLALFEKEMRVAMVLTGAKSISEITRDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ENTS8 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=lldD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.028e-14
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GE GV  +L ++  E  + M L+G +S+KEITR  +V
Sbjct:  289 ALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGEKGVANLLNLIEKEMRVAMTLTGAKSIKEITRESLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_AZOC5 (L-lactate dehydrogenase [cytochrome] OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=lldD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.870e-14
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A    + V  D G+R G DV + LALGA GV +GR   ++LA  G+AGV  +L ++  E  + MAL+G RS+ EITR+ +V
Sbjct:  289 ALPAIADAVGDDLTVLADSGIRTGLDVVRMLALGAKGVLLGRAFAYALATHGQAGVANLLDLIEKEMRVAMALTGARSIAEITRDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ERWCT (L-lactate dehydrogenase [cytochrome] OS=Erwinia carotovora subsp. atroseptica GN=lldD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.972e-14
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  228 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 500
            T  AL  +  A KG + +  D G+R G DV + +ALGA GV +GR   ++LA  GEAGV  +L ++  E  + M L+G +S+ +IT + +V
Sbjct:  286 TAHALPAIADAVKGDITILADSGIRSGLDVVRMIALGADGVMLGRAFVYALAAAGEAGVVNLLNLIEKEMRVAMTLTGAKSIADITSDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_CITK8 (L-lactate dehydrogenase [cytochrome] OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=lldD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.972e-14
Identity = 39/105 (37.14%), Postives = 61/105 (58.10%), Query Frame = -2
Query:  183 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHW--DTPGAVARL*DG 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+R+ +V       P A+A L  G
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATAGQAGVANLLDLIEKEMKVAMTLTGAKSISEISRDSLVQELGKSLPAALAPLTQG 393          
The following BLAST results are available for this feature:
BLAST of DN621420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
CYB2_HANAN2.136e-1546.67Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]
LLDD_PSEPK2.361e-1440.91L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEPG2.361e-1440.91L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEP12.361e-1440.91L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
CYB2_YEAST2.361e-1452.05Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
LLDD_PSEE44.028e-1440.91L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ENTS84.028e-1440.91L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]
LLDD_AZOC56.870e-1443.18L-lactate dehydrogenase [cytochrome] OS=Azorhizobi... [more]
LLDD_ERWCT8.972e-1439.56L-lactate dehydrogenase [cytochrome] OS=Erwinia ca... [more]
LLDD_CITK88.972e-1437.14L-lactate dehydrogenase [cytochrome] OS=Citrobacte... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06K24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621420 ID=DN621420; Name=DN621420; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTTTTAAAAGCCCCAAGCCAAGCCAAGCCAAGCCAAGCCAA
GCCGCACCTCCCTTTATTTAATTAATTCATACATCCTTGTCGTCTTAACA
ATATCCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAGTTGTTT
AAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAATCTGGC
TACAGCTCCTGGAGTGTCCCAATGAGTCACAATGTGGTTGCGTGTAATCT
CCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAACTCATCA
CGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAACTGCCAG
CGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTAGAGCCA
AAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGGAAAACA
GGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCATAACAGT
T
back to top