DN621420

Overview
NameDN621420
Unique NameDN621420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAE (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa GN=lldD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGVR +L+++  E  + M L+G +S+ EI+ + +V
Sbjct:  289 ALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAB (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lldD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGVR +L+++  E  + M L+G +S+ EI+ + +V
Sbjct:  289 ALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA8 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain LESB58) GN=lldD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGVR +L+++  E  + M L+G +S+ EI+ + +V
Sbjct:  289 ALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA7 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain PA7) GN=lldD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGVR +L+++  E  + M L+G +S+ EI+ + +V
Sbjct:  289 ALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ESCF3 (L-lactate dehydrogenase [cytochrome] OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=lldD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.530e-13
Identity = 39/105 (37.14%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  183 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWD--TPGAVARL*DG 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+++ +V   D   P A+A L  G
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLNLIEKEMKVAMTLTGAKSISEISQDSLVQELDKALPAALAPLAKG 393          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPW (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain W619) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LAV G+AGV+ +L++   E  + M L+G +++ EI+R+ +V
Sbjct:  289 ALPAIADAVKGDLKILADSGIRSGLDVVRMIALGADTVLIGRAFLWALAVHGQAGVKNLLELFEKEMRVAMVLTGAKAISEISRDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSM (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = -2
Query:  198 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVA 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V       A A
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQELSKAPAAA 386          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
The following BLAST results are available for this feature:
BLAST of DN621420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
LLDD_PSEAE1.172e-1339.77L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAB1.172e-1339.77L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA81.172e-1339.77L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA71.172e-1339.77L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ESCF31.530e-1337.14L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_PSEPW2.611e-1338.64L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ECOSM2.611e-1336.73L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_SHISS3.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL3.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF83.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621420 ID=DN621420; Name=DN621420; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTTTTAAAAGCCCCAAGCCAAGCCAAGCCAAGCCAAGCCAA
GCCGCACCTCCCTTTATTTAATTAATTCATACATCCTTGTCGTCTTAACA
ATATCCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAGTTGTTT
AAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAATCTGGC
TACAGCTCCTGGAGTGTCCCAATGAGTCACAATGTGGTTGCGTGTAATCT
CCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAACTCATCA
CGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAACTGCCAG
CGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTAGAGCCA
AAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGGAAAACA
GGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCATAACAGT
T
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