DN621420

Overview
NameDN621420
Unique NameDN621420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2 
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSINEITQDSLV 376
[Close]
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_SHIBS (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 4 (strain Sb227) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2 
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_SHIB3 (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2 
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ECOUT (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain UTI89 / UPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2 
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSE (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SE11) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2 
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLU (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2 
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLI (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12) GN=lldD PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2 
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLC (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2 
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ECOL6 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O6 GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2 
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ECOL5 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2 
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
The following BLAST results are available for this feature:
BLAST of DN621420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
LLDD_SHIDS3.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Shigella d... [more]
LLDD_SHIBS3.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_SHIB33.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_ECOUT3.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOSE3.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLU3.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLI3.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLC3.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOL63.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOL53.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621420 ID=DN621420; Name=DN621420; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTTTTAAAAGCCCCAAGCCAAGCCAAGCCAAGCCAAGCCAA
GCCGCACCTCCCTTTATTTAATTAATTCATACATCCTTGTCGTCTTAACA
ATATCCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAGTTGTTT
AAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAATCTGGC
TACAGCTCCTGGAGTGTCCCAATGAGTCACAATGTGGTTGCGTGTAATCT
CCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAACTCATCA
CGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAACTGCCAG
CGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTAGAGCCA
AAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGGAAAACA
GGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCATAACAGT
T
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