DN621420

Overview
NameDN621420
Unique NameDN621420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ECO27 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ECO24 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_BARHE (L-lactate dehydrogenase [cytochrome] OS=Bartonella henselae GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = -2
Query:  225 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVT 500
            TV AL  + +A K  + + +D GVR G DV + +A GA  V +GR   ++LA  GE GV  ++ +  +E  + M L+G R++KEITR  + +
Sbjct:  286 TVRALPAIAEAVKSDLTILVDSGVRSGLDVVRMIAQGADAVMIGRAFVYALAAAGEKGVAHLIDLFANEMRVAMTLTGVRAIKEITRESLAS 377          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LA2M_MYCSM (Lactate 2-monooxygenase OS=Mycobacterium smegmatis PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = -2
Query:  243 LEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 488
            L EVV+A+ G  PV  D G+R G DV KALA+GAS V +GRP  +  A+ G  G+  V + L  E +L MA+ G R+LKE+T
Sbjct:  306 LPEVVKAS-GDTPVLFDSGIRTGADVVKALAMGASAVGIGRPYAWGAALGGSKGIEHVARSLLAEADLIMAVDGYRNLKELT 386          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCM (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = -2
Query:  228 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 500
            TV AL  +  A KG + + +D G+R G DV + LALGA    +GR   ++LA  G AGV  +L +   E  + M L+G +S+ E++R+ +V
Sbjct:  286 TVQALPAIADAVKGDLKILVDSGIRTGLDVVRMLALGADCTMLGRSFIYALAAQGRAGVENLLDLYEKEMRVAMTLTGAKSIAELSRDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCH (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae GN=lldD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = -2
Query:  228 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 500
            TV AL  +  A KG + + +D G+R G DV + LALGA    +GR   ++LA  G AGV  +L +   E  + M L+G +S+ E++R+ +V
Sbjct:  286 TVQALPAIADAVKGDLKILVDSGIRTGLDVVRMLALGADCTMLGRSFIYALAAQGRAGVENLLDLYEKEMRVAMTLTGAKSIAELSRDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_PSEMY (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas mendocina (strain ymp) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LAV G+AGV  +L ++  E  + M L+G +S+ EIT + +V
Sbjct:  289 ALPAIADAVKGELKILADSGIRTGLDVVRMLALGADTVLLGRAFIYALAVAGQAGVSNLLDLIEKEMRVAMVLTGAKSIAEITSDLLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP7 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+ GV  +L ++  E ++ M L+G +S++EI+R+ +V
Sbjct:  289 ALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLNLIEKEMKVAMTLTGAKSIREISRDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_ECO81 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O81 (strain ED1a) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  + +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTILLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_XANP2 (L-lactate dehydrogenase [cytochrome] OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = -2
Query:  198 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVA 491
            A+  +  A KG + +  D G+R G DV + LA GA GV +GR   ++LA  G AGV  +L ++  E  + M L+G R++ +I+R+ +V   + P A A
Sbjct:  289 AMPAIADAVKGEMTLLADSGIRSGLDVVRMLAQGADGVLLGRAFVYALAAAGRAGVENLLDIIAKEMRVAMTLTGARAISDISRDSLVREIERPLARA 386          
The following BLAST results are available for this feature:
BLAST of DN621420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
LLDD_ECO273.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO243.410e-1338.64L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_BARHE3.410e-1338.04L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LA2M_MYCSM3.410e-1348.78Lactate 2-monooxygenase OS=Mycobacterium smegmatis... [more]
LLDD_VIBCM4.453e-1338.46L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_VIBCH4.453e-1338.46L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_PSEMY4.453e-1340.91L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_KLEP74.453e-1337.50L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_ECO814.453e-1337.50L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_XANP25.816e-1336.73L-lactate dehydrogenase [cytochrome] OS=Xanthobact... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621420 ID=DN621420; Name=DN621420; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTTTTAAAAGCCCCAAGCCAAGCCAAGCCAAGCCAAGCCAA
GCCGCACCTCCCTTTATTTAATTAATTCATACATCCTTGTCGTCTTAACA
ATATCCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAGTTGTTT
AAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAATCTGGC
TACAGCTCCTGGAGTGTCCCAATGAGTCACAATGTGGTTGCGTGTAATCT
CCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAACTCATCA
CGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAACTGCCAG
CGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTAGAGCCA
AAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGGAAAACA
GGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCATAACAGT
T
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