DN621420

Overview
NameDN621420
Unique NameDN621420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_XANOR (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae GN=lldD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = -2
Query:  243 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 491
            AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA DG+AGV  +L ++  E  + M L+G  S+ +I+
Sbjct:  289 ALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQIS 371          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_XANOP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = -2
Query:  243 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 491
            AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA DG+AGV  +L ++  E  + M L+G  S+ +I+
Sbjct:  289 ALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQIS 371          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_XANOM (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = -2
Query:  243 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 491
            AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA DG+AGV  +L ++  E  + M L+G  S+ +I+
Sbjct:  289 ALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQIS 371          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_AGRVS (L-lactate dehydrogenase [cytochrome] OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +A GA GV +GR   ++LA  G+AGV  +L +   E  + M L+G RS+ EI+ + +V
Sbjct:  289 ALPAIAAAVKGDLTILADSGIRSGLDVVRMIAQGADGVLIGRAFVYALAAAGQAGVENLLDLFAKEMRVAMTLTGARSIAEISPDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_YERPY (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  231 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 500
            T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  286 TARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_YERPS (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  231 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 500
            T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  286 TARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_YERPP (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis (strain Pestoides F) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  231 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 500
            T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  286 TARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_YERPN (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  231 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 500
            T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  286 TARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_YERPG (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Angola) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  231 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 500
            T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  286 TARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_YERPE (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  231 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 500
            T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  286 TARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
The following BLAST results are available for this feature:
BLAST of DN621420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
LLDD_XANOR2.210e-1239.76L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOP2.210e-1239.76L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOM2.210e-1239.76L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_AGRVS2.210e-1238.64L-lactate dehydrogenase [cytochrome] OS=Agrobacter... [more]
LLDD_YERPY2.886e-1236.67L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPS2.886e-1236.67L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPP2.886e-1236.67L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPN2.886e-1236.67L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPG2.886e-1236.67L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPE2.886e-1236.67L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621420 ID=DN621420; Name=DN621420; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTTTTAAAAGCCCCAAGCCAAGCCAAGCCAAGCCAAGCCAA
GCCGCACCTCCCTTTATTTAATTAATTCATACATCCTTGTCGTCTTAACA
ATATCCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAGTTGTTT
AAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAATCTGGC
TACAGCTCCTGGAGTGTCCCAATGAGTCACAATGTGGTTGCGTGTAATCT
CCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAACTCATCA
CGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAACTGCCAG
CGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTAGAGCCA
AAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGGAAAACA
GGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCATAACAGT
T
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