DN621420

Overview
NameDN621420
Unique NameDN621420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_YERPB (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  231 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 500
            T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  286 TARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_YERPA (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  231 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 500
            T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  286 TARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_YERP3 (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = -2
Query:  231 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 500
            T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  286 TARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_VIBPA (L-lactate dehydrogenase [cytochrome] OS=Vibrio parahaemolyticus GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = -2
Query:  228 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 500
            T  AL  +  A KG + +F+D G+R G DV + LALGA    +GR   ++LA  G AGV  +L +   E  + M L+G +++ +++R+ +V
Sbjct:  286 TAKALPSIADAVKGDLKIFVDSGIRTGLDVVRMLALGADCTLLGRSFVYALAAQGGAGVENLLDLYDKEMRVAMTLTGAKTIADLSRDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_SALTY (L-lactate dehydrogenase [cytochrome] OS=Salmonella typhimurium GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_SALSV (L-lactate dehydrogenase [cytochrome] OS=Salmonella schwarzengrund (strain CVM19633) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_SALPB (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_SALNS (L-lactate dehydrogenase [cytochrome] OS=Salmonella newport (strain SL254) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_SALHS (L-lactate dehydrogenase [cytochrome] OS=Salmonella heidelberg (strain SL476) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of DN621420 vs. ExPASy Swiss-Prot
Match: LLDD_SALDC (L-lactate dehydrogenase [cytochrome] OS=Salmonella dublin (strain CT_02021853) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  228 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 491
            AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  289 ALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
The following BLAST results are available for this feature:
BLAST of DN621420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
LLDD_YERPB2.886e-1236.67L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPA2.886e-1236.67L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERP32.886e-1236.67L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_VIBPA2.886e-1236.26L-lactate dehydrogenase [cytochrome] OS=Vibrio par... [more]
LLDD_SALTY2.886e-1237.50L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALSV2.886e-1237.50L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPB2.886e-1237.50L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALNS2.886e-1237.50L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALHS2.886e-1237.50L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALDC2.886e-1237.50L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621420 ID=DN621420; Name=DN621420; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTTTTAAAAGCCCCAAGCCAAGCCAAGCCAAGCCAAGCCAA
GCCGCACCTCCCTTTATTTAATTAATTCATACATCCTTGTCGTCTTAACA
ATATCCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAGTTGTTT
AAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAATCTGGC
TACAGCTCCTGGAGTGTCCCAATGAGTCACAATGTGGTTGCGTGTAATCT
CCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAACTCATCA
CGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAACTGCCAG
CGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTAGAGCCA
AAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGGAAAACA
GGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCATAACAGT
T
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