DN621411

Overview
NameDN621411
Unique NameDN621411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.375e-24
Identity = 57/111 (51.35%), Postives = 71/111 (63.96%), Query Frame = -1
Query:  191 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 523
            F K P + K   IWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   68 FEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          

HSP 2 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = -2
Query:  487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWY++ +LKK+KKS+G+++   ++FEK+P ++KN+G
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFG 79          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.375e-24
Identity = 57/111 (51.35%), Postives = 71/111 (63.96%), Query Frame = -1
Query:  191 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 523
            F K P + K   IWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct:   68 FEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175          

HSP 2 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = -2
Query:  487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWY++ +LKK+KKS+G+++   ++FEK+P ++KN+G
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFG 79          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  191 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 523
            F  +P K K   +++RY SR+G HN+YKEYRD T  GAV QMY+EMASRH  R   I II    I A L +R +TKQFH+SKIKFPL  R       K ++T+ A+RPN F
Sbjct:   64 FEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169          

HSP 2 Score: 98.2117 bits (243), Expect = 5.043e-20
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = -2
Query:  487 HQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 702
            H++QVVGR +PTE D +PKIYRM+L+A   + AKS+FWY+L K+ K+KKS G++L + EIFE  P K+KN+G
Sbjct:    4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFG 75          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_ICTPU (60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 55/109 (50.46%), Postives = 70/109 (64.22%), Query Frame = -1
Query:  191 KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 517
            + P K K   IWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RP  F
Sbjct:   70 QSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTRRPQTF 175          

HSP 2 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 32/71 (45.07%), Postives = 54/71 (76.06%), Query Frame = -2
Query:  487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWY++ +L+K+KK+NG+ +    + E++P K+KN+G
Sbjct:    9 EYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEQSPLKVKNFG 79          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  191 KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 517
            K P K K   IWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+  IQIIK   I A  C+R   KQFHNS I+FPL     R    K   T+   RP+ +
Sbjct:   70 KSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPL---PKRVHHHKRLNTFAYKRPSTY 175          

HSP 2 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 35/71 (49.30%), Postives = 60/71 (84.51%), Query Frame = -2
Query:  487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699
            +Y+V+GR LP+E++  P +Y+M++++ +++ AKS+FWY+LR+LKK KK+ G++++I EI EK+P KIKN+G
Sbjct:    9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFG 79          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22
Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  191 KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 517
            K P K K   +WLR  SR+G HNMY+EYRD T + AV Q Y +M +RHR R+  I I+K   I A  C+R + KQFH+SKIKFPL  R +R   R+    +   RPN F
Sbjct:   70 KTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHNPRFTTKRPNTF 175          

HSP 2 Score: 80.1073 bits (196), Expect = 1.421e-14
Identity = 33/71 (46.48%), Postives = 53/71 (74.65%), Query Frame = -2
Query:  487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWY++ +L+K+KK+NG+ +    + EK P K+KN+G
Sbjct:    9 EYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEKTPLKVKNFG 79          
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_CAEEL (60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.674e-21
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = -1
Query:  197 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPN 523
            F K P   K   +WL+Y SRTG+HNMY+EYRDTT+ GAV Q Y +M +RHR ++  I I+K  T+ A+  KR   K FH++KI+FPL  R  +   RK  + +  +R N
Sbjct:   71 FEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTK---RKNLSVFTTARQN 176          

HSP 2 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 37/72 (51.39%), Postives = 58/72 (80.56%), Query Frame = -2
Query:  487 HQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 702
            ++Y VVGR +PTE +    I++M+++ATN V AKS+FWY++  L++VKK+NG++L+I ++FEKNP  +KNYG
Sbjct:   11 NEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYG 82          
The following BLAST results are available for this feature:
BLAST of DN621411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_RAT3.375e-2451.3560S ribosomal protein L18a OS=Rattus norvegicus GN... [more]
RL18A_MOUSE3.375e-2451.3560S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]
RL18A_DICDI7.518e-2452.2560S ribosomal protein L18a OS=Dictyostelium discoi... [more]
RL18A_ICTPU9.819e-2450.4660S ribosomal protein L18a OS=Ictalurus punctatus ... [more]
RL18A_SPOFR6.364e-2349.5460S ribosomal protein L18a OS=Spodoptera frugiperd... [more]
RL18A_SALSA5.388e-2248.6260S ribosomal protein L18a OS=Salmo salar GN=rpl18... [more]
RL18A_CAEEL2.674e-2145.8760S ribosomal protein L18a OS=Caenorhabditis elega... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621411 ID=DN621411; Name=DN621411; organism=Citrus sinensis; type=EST; length=751bp
CCCTTTTTTTCACAAGCTCTTCATCAATGAACCAAATCAAACAATCATCA
AAATTTGAAAGATTGATTTTGCGGAATGTTTGGGCTCACATGTAAGGTAA
AATTTGTCTTGCCTGCTCTCTGCATAACAAACCAGTCAAAACAACCAGGC
TTTCAGATGACAAAACCAGCAGGCAATAAGCCGGTTACATGAACAAGTTA
GGCCTGGATGCCTTGTATGTCGTCCTGAGCTTCCTTGTTGGGGGCCTCAC
CTTCCGGAACACCAAGGGGAATTTGATTTTGGAGTTGTGGAACTGCTTGG
TGCTCTCCCTCTTGCAGAGCTTTGCTGGGATGGTAGCGGTCTTAATGATT
TGAATGCAAGGAGACCTCACCCTATGGCGGGACGCCATCTCATTGTACAT
TTGTTCAACAGCCCCATTAAGAGTTGTGTCCCTGTATTCCTTATACATGT
TGTGATAACCAGTTCGGCTCTGATACCGAAGCCAGATCCGTAATTCTTTA
TCTTTGTTGGGTTCTTTTCAAAAATCTCATTGATGGCCAAAACCTGCCCA
TTGCTCTTCTTCACTTTCTTCAGCTTCCTCAAGTAATACCAGAACTTAGA
TTTGGCACGGACCTCATTGGTGGCCCAAAGCTTCATGCGGTAGATCTTGG
GATGCTCATCCGTCTCCGTCGGCAAAGCTCTTCCCACAACTTGGTACTGG
TGAAACCTGAAAGTAACCATTCTCATACGAAATTAGAGAGAGAGAGGCTG
C
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