DN621411
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.375e-24 Identity = 57/111 (51.35%), Postives = 71/111 (63.96%), Query Frame = -1 Query: 191 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 523 F K P + K IWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F Sbjct: 68 FEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175 HSP 2 Score: 86.6557 bits (213), Expect = 1.518e-16 Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = -2 Query: 487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699 +Y+VVGR LPT P +YRM+++A N V AKS+FWY++ +LKK+KKS+G+++ ++FEK+P ++KN+G Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFG 79
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.375e-24 Identity = 57/111 (51.35%), Postives = 71/111 (63.96%), Query Frame = -1 Query: 191 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 523 F K P + K IWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F Sbjct: 68 FEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175 HSP 2 Score: 86.6557 bits (213), Expect = 1.518e-16 Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = -2 Query: 487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699 +Y+VVGR LPT P +YRM+++A N V AKS+FWY++ +LKK+KKS+G+++ ++FEK+P ++KN+G Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFG 79
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24 Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = -1 Query: 191 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 523 F +P K K +++RY SR+G HN+YKEYRD T GAV QMY+EMASRH R I II I A L +R +TKQFH+SKIKFPL R K ++T+ A+RPN F Sbjct: 64 FEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169 HSP 2 Score: 98.2117 bits (243), Expect = 5.043e-20 Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = -2 Query: 487 HQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 702 H++QVVGR +PTE D +PKIYRM+L+A + AKS+FWY+L K+ K+KKS G++L + EIFE P K+KN+G Sbjct: 4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFG 75
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_ICTPU (60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24 Identity = 55/109 (50.46%), Postives = 70/109 (64.22%), Query Frame = -1 Query: 191 KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 517 + P K K IWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+ IQI+K I A C+R + KQFH+SKIKFPL R +R R+ + + RP F Sbjct: 70 QSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTRRPQTF 175 HSP 2 Score: 79.337 bits (194), Expect = 2.424e-14 Identity = 32/71 (45.07%), Postives = 54/71 (76.06%), Query Frame = -2 Query: 487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699 +Y+VVGR LP+ + P +YRM+++A N V AKS+FWY++ +L+K+KK+NG+ + + E++P K+KN+G Sbjct: 9 EYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEQSPLKVKNFG 79
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23 Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = -1 Query: 191 KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 517 K P K K IWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+ IQIIK I A C+R KQFHNS I+FPL R K T+ RP+ + Sbjct: 70 KSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPL---PKRVHHHKRLNTFAYKRPSTY 175 HSP 2 Score: 89.7373 bits (221), Expect = 1.794e-17 Identity = 35/71 (49.30%), Postives = 60/71 (84.51%), Query Frame = -2 Query: 487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699 +Y+V+GR LP+E++ P +Y+M++++ +++ AKS+FWY+LR+LKK KK+ G++++I EI EK+P KIKN+G Sbjct: 9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFG 79
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.388e-22 Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = -1 Query: 191 KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 517 K P K K +WLR SR+G HNMY+EYRD T + AV Q Y +M +RHR R+ I I+K I A C+R + KQFH+SKIKFPL R +R R+ + RPN F Sbjct: 70 KTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHNPRFTTKRPNTF 175 HSP 2 Score: 80.1073 bits (196), Expect = 1.421e-14 Identity = 33/71 (46.48%), Postives = 53/71 (74.65%), Query Frame = -2 Query: 487 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 699 +Y+VVGR LP+ + P +YRM+++A N V AKS+FWY++ +L+K+KK+NG+ + + EK P K+KN+G Sbjct: 9 EYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEKTPLKVKNFG 79
BLAST of DN621411 vs. ExPASy Swiss-Prot
Match: RL18A_CAEEL (60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=2 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.674e-21 Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = -1 Query: 197 F*KEPNKDKELRIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPN 523 F K P K +WL+Y SRTG+HNMY+EYRDTT+ GAV Q Y +M +RHR ++ I I+K T+ A+ KR K FH++KI+FPL R + RK + + +R N Sbjct: 71 FEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTK---RKNLSVFTTARQN 176 HSP 2 Score: 89.7373 bits (221), Expect = 1.794e-17 Identity = 37/72 (51.39%), Postives = 58/72 (80.56%), Query Frame = -2 Query: 487 HQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYG 702 ++Y VVGR +PTE + I++M+++ATN V AKS+FWY++ L++VKK+NG++L+I ++FEKNP +KNYG Sbjct: 11 NEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYG 82 The following BLAST results are available for this feature:
BLAST of DN621411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DN621411 ID=DN621411; Name=DN621411; organism=Citrus sinensis; type=EST; length=751bpback to top |