DN621409

Overview
NameDN621409
Unique NameDN621409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_CANGA (GrpE protein homolog, mitochondrial OS=Candida glabrata GN=mge1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  453 KTEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 719
            K E  +K+  + +LY G+ MT  + +   +K+G+E+++P+ E+F+PN HEA FE A   K  G    V + GY L++RVIRP  VGV K
Sbjct:  141 KEEDLEKSKEISDLYTGVKMTRDVFEKTLKKYGIEKLDPLGERFDPNKHEATFELAQPDKEPGTVFHVQQLGYTLNERVIRPAKVGVVK 229          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_CAEEL (GrpE protein homolog, mitochondrial OS=Caenorhabditis elegans GN=C34C12.8 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.502e-13
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = -1
Query:  459 LKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFE--QAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGV 689
            LK+L+EG++MT +++   F KHGL  ++P +EKF+PNLHEA+F+   A   +P G     +K GY L +R IRP  VGV
Sbjct:  156 LKDLFEGVSMTRTVMAKTFAKHGLVTVDPTNEKFDPNLHEAVFQIPSANAKQPVGHIEVCTKIGYSLKERPIRPAQVGV 234          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_YEAST (GrpE protein homolog, mitochondrial OS=Saccharomyces cerevisiae GN=MGE1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = -1
Query:  447 KTEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK*E 719
            K E   K+  + +LY G+ MT  + ++  +KHG+E+++P+ E F+PN HEA FE     K  G    V + G+ L+DRVIRP  VG+ K E
Sbjct:  136 KEEDLQKSKEISDLYTGVRMTRDVFENTLRKHGIEKLDPLGEPFDPNKHEATFELPQPDKEPGTVFHVQQLGFTLNDRVIRPAKVGIVKGE 226          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_NITWN (Protein grpE OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=grpE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  453 NPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 698
            +P LK L EG+ +TE  L +  +KHG+++ +P  EKF+PN+H+A++E      P G    V + GY + +RV+RP LVGV+K
Sbjct:  107 DPGLKALIEGVELTERSLHNALEKHGVKKFDPAGEKFDPNVHQAMYEVPDPSIPVGTVAQVIQAGYMIGERVLRPALVGVAK 188          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_SCHPO (GrpE protein homolog, mitochondrial OS=Schizosaccharomyces pombe GN=mge1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = -1
Query:  453 DKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 704
            + N  L +LYEGL MTES L     K+GL + + + E F+PN+HEA+F+  VEGK           G++L+ RVIRP  VGV K
Sbjct:  137 ESNKDLVDLYEGLAMTESNLMKTLGKYGLVRYDGIGEDFDPNIHEAVFQIPVEGKKPNTVFHCESKGFQLNGRVIRPAKVGVVK 220          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_OLICO (Protein grpE OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=grpE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = -1
Query:  447 NPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK*E 698
            +P L  L EG+ +TE  L    +K+G+++++   EKF+PN+H+A+FE      P G    V +TGY + DRV+RP LVGVSK E
Sbjct:  112 DPGLTALIEGVELTERSLHRALEKNGVKKLDAAGEKFDPNIHQAMFEVPDNSVPPGTVVQVIQTGYMIGDRVLRPALVGVSKAE 195          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_METSB (Protein grpE OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=grpE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  453 PHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 695
            P ++ L EGL +TE    S  ++ G+++++P  +KF+PNLHEALFEQ  E  P G    V + GY + +RV+RP  VGVS+
Sbjct:  102 PAVQTLIEGLQLTERDFASRLERFGVKKIDPAGQKFDPNLHEALFEQPDESVPNGTVTQVIEPGYVIGERVLRPAKVGVSR 182          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_ZYMMO (Protein grpE OS=Zymomonas mobilis GN=grpE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = -1
Query:  453 LKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 689
            +KNL  G+ MT   L ++ Q+HG++++  V +K +PNLH+A+ E   E KP G      + GY +HDR++RP +VGV+K
Sbjct:  104 IKNLVTGIEMTGKELLNILQRHGIKRVESVGQKLDPNLHQAMIEIESE-KPEGTVVQEMQAGYTIHDRLLRPAMVGVAK 181          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE2_BOVIN (GrpE protein homolog 2, mitochondrial OS=Bos taurus GN=GRPEL2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = -1
Query:  456 TECVSK-TEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFE-QAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVS 734
            TEC+S+ TE  D+   L+ ++ GL++ E+ LKSVF KHGLE+M P+ +K++P+ HE +    A  G   G    V + GYKLH R IR   V V+
Sbjct:  123 TECISEETEPADQKLTLEKIFRGLSLLEAKLKSVFAKHGLEKMTPIGDKYDPHEHELICHVPAGVGVQPGTVAFVRQDGYKLHGRTIRLAQVEVA 217          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_BRAJA (Protein grpE OS=Bradyrhizobium japonicum GN=grpE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = -1
Query:  453 NPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 698
            +P L +L EG+ +TE  L +  +KHG+++ +P  +KF+PN  +A+FE      PAG    V + GY + +RV+RP LVGV+K
Sbjct:  105 DPGLTSLIEGVELTERSLLNALEKHGVKKFDPQGQKFDPNFQQAMFEVPDASVPAGTVVQVMQAGYTIGERVLRPALVGVAK 186          
The following BLAST results are available for this feature:
BLAST of DN621409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GRPE_CANGA8.805e-1441.57GrpE protein homolog, mitochondrial OS=Candida gla... [more]
GRPE_CAEEL1.502e-1346.84GrpE protein homolog, mitochondrial OS=Caenorhabdi... [more]
GRPE_YEAST1.962e-1340.66GrpE protein homolog, mitochondrial OS=Saccharomyc... [more]
GRPE_NITWN4.370e-1342.68Protein grpE OS=Nitrobacter winogradskyi (strain N... [more]
GRPE_SCHPO7.454e-1345.24GrpE protein homolog, mitochondrial OS=Schizosacch... [more]
GRPE_OLICO9.735e-1344.05Protein grpE OS=Oligotropha carboxidovorans (strai... [more]
GRPE_METSB2.833e-1244.44Protein grpE OS=Methylocella silvestris (strain BL... [more]
GRPE_ZYMMO3.699e-1241.77Protein grpE OS=Zymomonas mobilis GN=grpE PE=3 SV=... [more]
GRPE2_BOVIN3.699e-1243.16GrpE protein homolog 2, mitochondrial OS=Bos tauru... [more]
GRPE_BRAJA4.832e-1241.46Protein grpE OS=Bradyrhizobium japonicum GN=grpE P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621409 ID=DN621409; Name=DN621409; organism=Citrus sinensis; type=EST; length=734bp
TTTTTTTTTTTTTTTCTATTGTATGGCGATAACTCTTTAATACGTGATTT
TGCCTGTATGACAAATTCGAAATTGATAGTCAGTTTAGTTCTGTACAGAA
GTTTTCTAACATGAGATGAACAGATGATAAACAGAAGATTCGTAGATATA
ACAACATGAACATTATGAGAAGTTTGATAATCATAGAAATATTCAACATT
ATTATTTATAGGTTTGATCATCATAGAAGTACGAGAATCATTTCTGCATT
CCAACACAATTAATCATGTATCAAAAGAATACTCCGTTGGAAGAGCGTTC
CTTCTCAAGAATTCATCTAGGAAATTCCGGAATGCATTACTACCATTAAC
AACTGTACAACTTAACTACTCAACTTCACCGGCTTATAAATTTCGGAATT
ATTGGTAGTTTTAACGTTGGCATGGACGATGGTGAATTACTAGGTGTTCT
CATTTGGAAACACCAACCAGTGGGGGTCGTATAACTCGGTCGTGTAATTT
GTATCCTGTTTTAGAGACAACGACGACAACACCAGCAGGTTTGCCTTCCA
CCGCTTGTTCAAATAGAGCTTCGTGAAGGTTTGGATTGAATTTCTCATCA
ACCGGATTCATCTGTTCTAAACCGTGTTTCTGGAATACACTTTTCAAAAT
ACTTTCGGTCATCGTCAAGCCTTCGTACAGATTTTTAAGATGTGGATTCT
TATCCGTAACCTCAGTTTTTGAAACACACTCGGT
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