DN621409

Overview
NameDN621409
Unique NameDN621409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_BRUSU (Protein grpE OS=Brucella suis GN=grpE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = -1
Query:  453 EVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 713
            +  + + +LK+L EG+ MTE  +    ++HG++++ P  +KF+PN H+A+FE      P      V + GY + DRV+RP +VGVSK
Sbjct:  126 DALEADSNLKSLSEGVEMTERAMLLALERHGVKKLEPEGQKFDPNFHQAMFEVPNPDLPNNTVVQVVQAGYAIGDRVLRPAMVGVSK 212          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_BRUSI (Protein grpE OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=grpE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = -1
Query:  453 EVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 713
            +  + + +LK+L EG+ MTE  +    ++HG++++ P  +KF+PN H+A+FE      P      V + GY + DRV+RP +VGVSK
Sbjct:  126 DALEADSNLKSLSEGVEMTERAMLLALERHGVKKLEPEGQKFDPNFHQAMFEVPNPDLPNNTVVQVVQAGYAIGDRVLRPAMVGVSK 212          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_BRUO2 (Protein grpE OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=grpE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = -1
Query:  453 EVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 713
            +  + + +LK+L EG+ MTE  +    ++HG++++ P  +KF+PN H+A+FE      P      V + GY + DRV+RP +VGVSK
Sbjct:  126 DALEADSNLKSLSEGVEMTERAMLLALERHGVKKLEPEGQKFDPNFHQAMFEVPNPDLPNNTVVQVVQAGYAIGDRVLRPAMVGVSK 212          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_BRUME (Protein grpE OS=Brucella melitensis GN=grpE PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = -1
Query:  453 EVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 713
            +  + + +LK+L EG+ MTE  +    ++HG++++ P  +KF+PN H+A+FE      P      V + GY + DRV+RP +VGVSK
Sbjct:  122 DALEADSNLKSLSEGVEMTERAMLLALERHGVKKLEPEGQKFDPNFHQAMFEVPNPDLPNNTVVQVVQAGYAIGDRVLRPAMVGVSK 208          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_BRUC2 (Protein grpE OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=grpE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = -1
Query:  453 EVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 713
            +  + + +LK+L EG+ MTE  +    ++HG++++ P  +KF+PN H+A+FE      P      V + GY + DRV+RP +VGVSK
Sbjct:  126 DALEADSNLKSLSEGVEMTERAMLLALERHGVKKLEPEGQKFDPNFHQAMFEVPNPDLPNNTVVQVVQAGYAIGDRVLRPAMVGVSK 212          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_OCHA4 (Protein grpE OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=grpE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = -1
Query:  453 LKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 689
            LK+L +G+ MTE  +    ++HG++++ P  EKF+PN H+A+FE      P      V + GY + DRV+RP +VGVSK
Sbjct:  134 LKSLADGVEMTERAMLQALERHGVKKLEPEGEKFDPNFHQAMFEVPNPDLPNNTVVQVVQDGYAIGDRVLRPAMVGVSK 212          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_SINMW (Protein grpE OS=Sinorhizobium medicae (strain WSM419) GN=grpE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = -1
Query:  453 LKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 689
            LK L EG+ MTE  + +  ++HG++Q++P  +KF+PN H+A+FE      P      V + GY + +RV+RP +VGV+K
Sbjct:  115 LKALIEGVEMTERSMLAALERHGVKQLDPTGQKFDPNFHQAMFEVPNPEVPNNTVVQVVQAGYTIGERVLRPAMVGVAK 193          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_RHIME (Protein grpE OS=Rhizobium meliloti GN=grpE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = -1
Query:  453 LKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 689
            LK L EG+ MTE  + +  ++HG++Q++P  +KF+PN H+A+FE      P      V + GY + +RV+RP +VGV+K
Sbjct:  115 LKALIEGVEMTERSMLAALERHGVKQLDPTGQKFDPNFHQAMFEVPNTEVPNNTVVQVVQAGYTIGERVLRPAMVGVAK 193          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_RHILO (Protein grpE OS=Rhizobium loti GN=grpE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = -1
Query:  453 KNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 686
            K L EG+ +TE  + S  ++HG++++ P  EKF+PN H+A+FE      PA     V + GY + +RV+RP +VGV+K
Sbjct:  109 KALIEGVDLTERAMLSALERHGVKKLAPEGEKFDPNFHQAMFEVPNPDVPANTVVQVVQPGYSIGERVLRPAMVGVAK 186          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_THIDA (Protein grpE OS=Thiobacillus denitrificans (strain ATCC 25259) GN=grpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = -1
Query:  453 KNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEG-KPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 701
            ++P + NL +G+T+T   L +VF K  L  + P+ EKF+P+LH+A+  Q VE  +PA     V + GY+LHDR +RP LV V+K
Sbjct:   89 ESPSVDNLKDGVTLTLKQLSAVFGKFNLHDIEPLGEKFDPHLHQAI--QVVESEQPANTVVTVLQKGYRLHDRTLRPALVMVAK 170          
The following BLAST results are available for this feature:
BLAST of DN621409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GRPE_BRUSU8.241e-1237.93Protein grpE OS=Brucella suis GN=grpE PE=3 SV=1[more]
GRPE_BRUSI8.241e-1237.93Protein grpE OS=Brucella suis (strain ATCC 23445 /... [more]
GRPE_BRUO28.241e-1237.93Protein grpE OS=Brucella ovis (strain ATCC 25840 /... [more]
GRPE_BRUME8.241e-1237.93Protein grpE OS=Brucella melitensis GN=grpE PE=3 S... [more]
GRPE_BRUC28.241e-1237.93Protein grpE OS=Brucella canis (strain ATCC 23365 ... [more]
GRPE_OCHA41.406e-1141.77Protein grpE OS=Ochrobactrum anthropi (strain ATCC... [more]
GRPE_SINMW2.398e-1140.51Protein grpE OS=Sinorhizobium medicae (strain WSM4... [more]
GRPE_RHIME2.398e-1140.51Protein grpE OS=Rhizobium meliloti GN=grpE PE=3 SV... [more]
GRPE_RHILO4.090e-1141.03Protein grpE OS=Rhizobium loti GN=grpE PE=3 SV=1[more]
GRPE_THIDA5.342e-1144.05Protein grpE OS=Thiobacillus denitrificans (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621409 ID=DN621409; Name=DN621409; organism=Citrus sinensis; type=EST; length=734bp
TTTTTTTTTTTTTTTCTATTGTATGGCGATAACTCTTTAATACGTGATTT
TGCCTGTATGACAAATTCGAAATTGATAGTCAGTTTAGTTCTGTACAGAA
GTTTTCTAACATGAGATGAACAGATGATAAACAGAAGATTCGTAGATATA
ACAACATGAACATTATGAGAAGTTTGATAATCATAGAAATATTCAACATT
ATTATTTATAGGTTTGATCATCATAGAAGTACGAGAATCATTTCTGCATT
CCAACACAATTAATCATGTATCAAAAGAATACTCCGTTGGAAGAGCGTTC
CTTCTCAAGAATTCATCTAGGAAATTCCGGAATGCATTACTACCATTAAC
AACTGTACAACTTAACTACTCAACTTCACCGGCTTATAAATTTCGGAATT
ATTGGTAGTTTTAACGTTGGCATGGACGATGGTGAATTACTAGGTGTTCT
CATTTGGAAACACCAACCAGTGGGGGTCGTATAACTCGGTCGTGTAATTT
GTATCCTGTTTTAGAGACAACGACGACAACACCAGCAGGTTTGCCTTCCA
CCGCTTGTTCAAATAGAGCTTCGTGAAGGTTTGGATTGAATTTCTCATCA
ACCGGATTCATCTGTTCTAAACCGTGTTTCTGGAATACACTTTTCAAAAT
ACTTTCGGTCATCGTCAAGCCTTCGTACAGATTTTTAAGATGTGGATTCT
TATCCGTAACCTCAGTTTTTGAAACACACTCGGT
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