DN621409

Overview
NameDN621409
Unique NameDN621409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_RHOPT (Protein grpE OS=Rhodopseudomonas palustris (strain TIE-1) GN=grpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  453 PHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 695
            P LK L EG+ +TE  L +  +K+G+++ +P  +KF+PN  +A++E      PAG    V + G+ + DRV+RP LVGV+K
Sbjct:  109 PGLKALIEGVELTERSLLNALEKNGVKKFDPKGQKFDPNFQQAMYEVPDPSVPAGTVVQVVQAGFTIGDRVLRPALVGVAK 189          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_RHOPA (Protein grpE OS=Rhodopseudomonas palustris GN=grpE PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  453 PHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 695
            P LK L EG+ +TE  L +  +K+G+++ +P  +KF+PN  +A++E      PAG    V + G+ + DRV+RP LVGV+K
Sbjct:  109 PGLKALIEGVELTERSLLNALEKNGVKKFDPKGQKFDPNFQQAMYEVPDPSVPAGTVVQVVQAGFTIGDRVLRPALVGVAK 189          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_RHILW (Protein grpE OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=grpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = -1
Query:  453 LKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 689
            L  L EG+ MTE  + S  ++HG+ ++ PV +KF+PN H+A+FE      P      V + G+ + +RV+RP +VGV+K
Sbjct:  113 LSTLIEGVEMTERAMLSALERHGVRKLEPVGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGFSIGERVLRPAMVGVAK 191          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_MESSB (Protein grpE OS=Mesorhizobium sp. (strain BNC1) GN=grpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = -1
Query:  453 ECVSKTEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 731
            + VS+      +  LK L EG+ MTE  + +  ++HG+++++P  EKF+P+ H+A+FE      P      V + GY + DRV+RP +VGV+K
Sbjct:  108 QAVSEEARAQADSGLKALVEGVEMTERAMLATLERHGVKRVDPNGEKFDPHFHQAMFEVPNADVPNNTVVQVVQPGYVIGDRVLRPAMVGVAK 200          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_RHIL3 (Protein grpE OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=grpE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = -1
Query:  453 LKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 689
            L  L EG+ MTE  + S  ++HG+ ++ PV +KF+PN H+A+FE      P      V + G+ + +RV+RP +VGV+K
Sbjct:  113 LSTLIEGVEMTERAMLSALERHGVRKLEPVGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGFTIGERVLRPAMVGVAK 191          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_RHIE6 (Protein grpE OS=Rhizobium etli (strain CIAT 652) GN=grpE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = -1
Query:  453 LKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 689
            L +L EG+ MTE  + S  ++HG+ ++ PV +KF+PN H+A+FE      P      V + G+ + +RV+RP +VGV+K
Sbjct:  113 LTSLIEGVEMTERAMLSALERHGVRKLEPVGQKFDPNFHQAMFEVPNSEVPNNTVVQVVQAGFTIGERVLRPAMVGVAK 191          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE2_PONAB (GrpE protein homolog 2, mitochondrial OS=Pongo abelii GN=GRPEL2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = -1
Query:  456 TECVSK-TEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFE-QAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVS 734
            TEC+S+ +E  D+   L+ ++ GL + E+ LKSVF KHGLE++ P+ +K++P+ HE +    A  G   G    V + GYKLH R IR   V V+
Sbjct:  124 TECISEESEPEDQKLTLEKVFRGLLLLEAKLKSVFAKHGLEKLTPIGDKYDPHEHELICHVPAGVGVQPGTVALVRQDGYKLHGRTIRLARVEVA 218          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE2_HUMAN (GrpE protein homolog 2, mitochondrial OS=Homo sapiens GN=GRPEL2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = -1
Query:  456 TECVSK-TEVTDKNPHLKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFE-QAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVS 734
            TEC+S+ +E  D+   L+ ++ GL + E+ LKSVF KHGLE++ P+ +K++P+ HE +    A  G   G    V + GYKLH R IR   V V+
Sbjct:  124 TECISEESEPEDQKLTLEKVFRGLLLLEAKLKSVFAKHGLEKLTPIGDKYDPHEHELICHVPAGVGVQPGTVALVRQDGYKLHGRTIRLARVEVA 218          
BLAST of DN621409 vs. ExPASy Swiss-Prot
Match: GRPE_RHOPS (Protein grpE OS=Rhodopseudomonas palustris (strain BisB5) GN=grpE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = -1
Query:  453 LKNLYEGLTMTESILKSVFQKHGLEQMNPVDEKFNPNLHEALFEQAVEGKPAGXXXXVSKTGYKLHDRVIRPPLVGVSK 689
            LK L EG+ +TE  L +  +K+G+++ +P  EKF+PN  +A++E      PAG    V + G+ + +RV+RP LVGVSK
Sbjct:  110 LKGLIEGVELTERSLINALEKNGVKKFDPQGEKFDPNFQQAMYEVPDPSVPAGTVVQVVQAGFMIGERVLRPALVGVSK 188          
The following BLAST results are available for this feature:
BLAST of DN621409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GRPE_RHOPT5.342e-1140.74Protein grpE OS=Rhodopseudomonas palustris (strain... [more]
GRPE_RHOPA5.342e-1140.74Protein grpE OS=Rhodopseudomonas palustris GN=grpE... [more]
GRPE_RHILW5.342e-1139.24Protein grpE OS=Rhizobium leguminosarum bv. trifol... [more]
GRPE_MESSB5.342e-1136.56Protein grpE OS=Mesorhizobium sp. (strain BNC1) GN... [more]
GRPE_RHIL36.977e-1139.24Protein grpE OS=Rhizobium leguminosarum bv. viciae... [more]
GRPE_RHIE66.977e-1139.24Protein grpE OS=Rhizobium etli (strain CIAT 652) G... [more]
GRPE2_PONAB6.977e-1141.05GrpE protein homolog 2, mitochondrial OS=Pongo abe... [more]
GRPE2_HUMAN6.977e-1141.05GrpE protein homolog 2, mitochondrial OS=Homo sapi... [more]
GRPE_RHOPS9.112e-1141.77Protein grpE OS=Rhodopseudomonas palustris (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621409 ID=DN621409; Name=DN621409; organism=Citrus sinensis; type=EST; length=734bp
TTTTTTTTTTTTTTTCTATTGTATGGCGATAACTCTTTAATACGTGATTT
TGCCTGTATGACAAATTCGAAATTGATAGTCAGTTTAGTTCTGTACAGAA
GTTTTCTAACATGAGATGAACAGATGATAAACAGAAGATTCGTAGATATA
ACAACATGAACATTATGAGAAGTTTGATAATCATAGAAATATTCAACATT
ATTATTTATAGGTTTGATCATCATAGAAGTACGAGAATCATTTCTGCATT
CCAACACAATTAATCATGTATCAAAAGAATACTCCGTTGGAAGAGCGTTC
CTTCTCAAGAATTCATCTAGGAAATTCCGGAATGCATTACTACCATTAAC
AACTGTACAACTTAACTACTCAACTTCACCGGCTTATAAATTTCGGAATT
ATTGGTAGTTTTAACGTTGGCATGGACGATGGTGAATTACTAGGTGTTCT
CATTTGGAAACACCAACCAGTGGGGGTCGTATAACTCGGTCGTGTAATTT
GTATCCTGTTTTAGAGACAACGACGACAACACCAGCAGGTTTGCCTTCCA
CCGCTTGTTCAAATAGAGCTTCGTGAAGGTTTGGATTGAATTTCTCATCA
ACCGGATTCATCTGTTCTAAACCGTGTTTCTGGAATACACTTTTCAAAAT
ACTTTCGGTCATCGTCAAGCCTTCGTACAGATTTTTAAGATGTGGATTCT
TATCCGTAACCTCAGTTTTTGAAACACACTCGGT
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