DN621407

Overview
NameDN621407
Unique NameDN621407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621407 vs. ExPASy Swiss-Prot
Match: VGLU3_DANRE (Vesicular glutamate transporter 3 OS=Danio rerio GN=slc17a8 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 50/137 (36.50%), Postives = 75/137 (54.74%), Query Frame = -3
Query:  381 SWGFFVILSWMPIYFNSVYHVDLRQASWFSAVPWSVMAFTGYLGGLLSDTLIQRGT-SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAIL 788
            SW F+++L   P YF  V+   + +    SAVP  VM     +GG L+D L  R   S T  RKI+   GF      L+ +  + +  +A ++L LA+G   F+ SGF VN  +IAP+Y+ +L GISN  GT + ++
Sbjct:  328 SWTFYLLLISQPAYFEEVFGFPISKVGILSAVPHMVMTIIVPIGGQLADFLRSRKILSTTTVRKIMNCGGFGMEATLLLVVGFSHTRAVAISFLILAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMV 464          
BLAST of DN621407 vs. ExPASy Swiss-Prot
Match: VGL2B_DANRE (Vesicular glutamate transporter 2.2 OS=Danio rerio GN=slc17a6l PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = -3
Query:  381 SWGFFVILSWMPIYFNSVYHVDLRQASWFSAVPWSVMAFTGYLGGLLSDTLIQRGTSVTLT-RKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAIL 788
            SW F+++L   P YF  V+  ++ +    SA+P  VM     +GG L+D L  +    T T RKI+   GF      L+ +  + S  +A ++L LA+G   F+ SGF VN  +IAP+Y+ +L GISN  GT + ++
Sbjct:  324 SWTFYLLLISQPAYFEEVFGFEISKVGMVSALPHLVMTIIVPIGGQLADYLRSKNILTTTTVRKIMNCGGFGMEATLLLVVGFSHSKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMV 460          
BLAST of DN621407 vs. ExPASy Swiss-Prot
Match: NPT4_HUMAN (Sodium-dependent phosphate transport protein 4 OS=Homo sapiens GN=SLC17A3 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 46/147 (31.29%), Postives = 78/147 (53.06%), Query Frame = -3
Query:  354 HSWGFFVILSWMPIYFNSVYHVDLRQASWFSAVPWSVMAFTGYLGGLLSDTLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP-VMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAGFFV 791
            H W    ++ ++P Y +SVYHV++R     SA+P+ V    G +GG L+D L+ +   +   RKI   +G +     ++ L    S  + A+A LTL+ G+ +   SG  +N+ +IAP+YS  L G S    + A ++    +GF +
Sbjct:  228 HQWLVSTMVVYIPTYISSVYHVNIRDNGLLSALPFIVAWVIGMVGGYLADFLLTKKFRLITVRKIATILGSLPSSALIVSLPYLNSGYITATALLTLSCGLSTLCQSGIYINVLDIAPRYSSFLMGASRGFSSIAPVIVPTVSGFLL 374          
BLAST of DN621407 vs. ExPASy Swiss-Prot
Match: VGLU2_RAT (Vesicular glutamate transporter 2 OS=Rattus norvegicus GN=Slc17a6 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.402e-15
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  363 SWGFFVILSWMPIYFNSVYHVDLRQASWFSAVPWSVMAFTGYLGGLLSDTLIQRGT-SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAG 788
            SW F+++L   P YF  V+  ++ +    SAVP  VM     +GG ++D L  +   S T  RKI+   GF      L+ +  + +  +A ++L LA+G   F+ SGF VN  +IAP+Y+ +L GISN  GT + ++  +  G
Sbjct:  323 SWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTIIVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVG 465          
BLAST of DN621407 vs. ExPASy Swiss-Prot
Match: VGLU2_HUMAN (Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.402e-15
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  363 SWGFFVILSWMPIYFNSVYHVDLRQASWFSAVPWSVMAFTGYLGGLLSDTLIQRGT-SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAG 788
            SW F+++L   P YF  V+  ++ +    SAVP  VM     +GG ++D L  +   S T  RKI+   GF      L+ +  + +  +A ++L LA+G   F+ SGF VN  +IAP+Y+ +L GISN  GT + ++  +  G
Sbjct:  323 SWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTIIVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVG 465          
BLAST of DN621407 vs. ExPASy Swiss-Prot
Match: VGLU2_BOVIN (Vesicular glutamate transporter 2 OS=Bos taurus GN=SLC17A6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.402e-15
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  363 SWGFFVILSWMPIYFNSVYHVDLRQASWFSAVPWSVMAFTGYLGGLLSDTLIQRGT-SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAG 788
            SW F+++L   P YF  V+  ++ +    SAVP  VM     +GG ++D L  +   S T  RKI+   GF      L+ +  + +  +A ++L LA+G   F+ SGF VN  +IAP+Y+ +L GISN  GT + ++  +  G
Sbjct:  323 SWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTIIVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVG 465          
BLAST of DN621407 vs. ExPASy Swiss-Prot
Match: VGLU3_RAT (Vesicular glutamate transporter 3 OS=Rattus norvegicus GN=Slc17a8 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = -3
Query:  381 SWGFFVILSWMPIYFNSVYHVDLRQASWFSAVPWSVMAFTGYLGGLLSDTLIQRGT-SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAIL 788
            SW F+++L   P YF  V+   + +    SAVP  VM     +GG L+D L  R   + T  RKI+   GF      L+ +  + +  +A ++L LA+G   F+ SGF VN  +IAP+Y+ +L GISN  GT + ++
Sbjct:  327 SWTFYLLLISQPAYFEEVFGFAISKVGLLSAVPHMVMTIVVPIGGQLADYLRSRKILTTTAVRKIMNCGGFGMEATLLLVVGFSHTKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMV 463          
BLAST of DN621407 vs. ExPASy Swiss-Prot
Match: VGLU3_MOUSE (Vesicular glutamate transporter 3 OS=Mus musculus GN=Slc17a8 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = -3
Query:  381 SWGFFVILSWMPIYFNSVYHVDLRQASWFSAVPWSVMAFTGYLGGLLSDTLIQRGT-SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAIL 788
            SW F+++L   P YF  V+   + +    SAVP  VM     +GG L+D L  R   + T  RKI+   GF      L+ +  + +  +A ++L LA+G   F+ SGF VN  +IAP+Y+ +L GISN  GT + ++
Sbjct:  340 SWTFYLLLISQPAYFEEVFGFAISKVGLLSAVPHMVMTIVVPIGGQLADYLRSRKILTTTAVRKIMNCGGFGMEATLLLVVGFSHTKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMV 476          
BLAST of DN621407 vs. ExPASy Swiss-Prot
Match: VGLU3_HUMAN (Vesicular glutamate transporter 3 OS=Homo sapiens GN=SLC17A8 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = -3
Query:  381 SWGFFVILSWMPIYFNSVYHVDLRQASWFSAVPWSVMAFTGYLGGLLSDTLIQRGT-SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAIL 788
            SW F+++L   P YF  V+   + +    SAVP  VM     +GG L+D L  R   + T  RKI+   GF      L+ +  + +  +A ++L LA+G   F+ SGF VN  +IAP+Y+ +L GISN  GT + ++
Sbjct:  327 SWTFYLLLISQPAYFEEVFGFAISKVGLLSAVPHMVMTIVVPIGGQLADYLRSRQILTTTAVRKIMNCGGFGMEATLLLVVGFSHTKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMV 463          
BLAST of DN621407 vs. ExPASy Swiss-Prot
Match: VGLU1_RAT (Vesicular glutamate transporter 1 OS=Rattus norvegicus GN=Slc17a7 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.392e-15
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  363 SWGFFVILSWMPIYFNSVYHVDLRQASWFSAVPWSVMAFTGYLGGLLSDTLIQRGT-SVTLTRKILQSIGFIAPGIALIGLTAAKSPVMASAWLTLAIGMKSFSHSGFLVNLQEIAPQYSGVLHGISNTAGTFAAILGTVGAG 788
            SW F+++L   P YF  V+  ++ +    SA+P  VM     +GG ++D L  R   S T  RK++   GF      L+ +  + S  +A ++L LA+G   F+ SGF VN  +IAP+Y+ +L GISN  GT + ++  +  G
Sbjct:  315 SWTFYLLLISQPAYFEEVFGFEISKVGLVSALPHLVMTIIVPIGGQIADFLRSRHIMSTTNVRKLMNCGGFGMEATLLLVVGYSHSKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVG 457          
The following BLAST results are available for this feature:
BLAST of DN621407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
VGLU3_DANRE8.221e-1636.50Vesicular glutamate transporter 3 OS=Danio rerio G... [more]
VGL2B_DANRE8.221e-1635.77Vesicular glutamate transporter 2.2 OS=Danio rerio... [more]
NPT4_HUMAN8.221e-1631.29Sodium-dependent phosphate transport protein 4 OS=... [more]
VGLU2_RAT1.402e-1534.27Vesicular glutamate transporter 2 OS=Rattus norveg... [more]
VGLU2_HUMAN1.402e-1534.27Vesicular glutamate transporter 2 OS=Homo sapiens ... [more]
VGLU2_BOVIN1.402e-1534.27Vesicular glutamate transporter 2 OS=Bos taurus GN... [more]
VGLU3_RAT1.831e-1535.77Vesicular glutamate transporter 3 OS=Rattus norveg... [more]
VGLU3_MOUSE1.831e-1535.77Vesicular glutamate transporter 3 OS=Mus musculus ... [more]
VGLU3_HUMAN1.831e-1535.77Vesicular glutamate transporter 3 OS=Homo sapiens ... [more]
VGLU1_RAT2.392e-1534.27Vesicular glutamate transporter 1 OS=Rattus norveg... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06K18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621407 ID=DN621407; Name=DN621407; organism=Citrus sinensis; type=EST; length=796bp
CCCCCCCCTTTTTTTTTAAAAATGAAAACTAGTGCCTGTGGATAAATGCA
CTTTTTATCTTACCTCATACAAGATGCTACAACTTTGGTACAATCAGGGA
TGCAATTATGCAAATATCATACCCTGTACAATTCTTTTATTTTGCAGGGA
AAAAGAGAAAAGAAAAAAAAAAAGCCCTTTTCTTTTAATACAGGATTCAA
CCGCTATTTGGCAGGAGACTTGGACCTCGTTCATAAAGCAGCTTCATCAA
AATTCACTCTCTCTCCTGTAGAAAAGATGATGTAGAAAAGGGCAGAGAGG
AAATATAAGAGCGATGTGAGCAACAGAAACCCTTGGAAAGAGCCCACAAG
CTCCACAAAAAAACCAGCTCCAACTGTTCCTAAAATGGCAGCAAATGTTC
CGGCAGTATTTGAGATTCCGTGTAAAACACCAGAATATTGGGGAGCAATC
TCCTGAAGATTCACAAGAAAACCCGAGTGACTGAAAGATTTCATTCCAAT
GGCTAAAGTCAGCCATGCAGACGCCATTACTGGACTTTTTGCTGCAGTTA
ACCCAATAAGTGCAATTCCCGGTGCGATAAAACCAATTGACTGCAAGATC
TTGCGAGTCAAAGTCACACTTGTGCCCCTCTGTATCAACGTGTCTGACAA
TAAACCACCCAAGTATCCTGTAAATGCCATAACACTCCATGGAACAGCAC
TAAACCATGATGCTTGTCTCAGGTCAACATGATATACAGAGTTGAAGTAG
ATTGGCATCCACGAAAGAATAACAAAAAAACCCCAACTATGCATGG
back to top