DN621406

Overview
NameDN621406
Unique NameDN621406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_SYNPX (Photosystem I assembly protein ycf3 OS=Synechococcus sp. (strain WH8102) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = -2
Query:   25 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 243
            +SAQ++G+YAEAL+NY EA++LE +P DR   L N+ +I+ SNGE  +A+E Y RAL+ N   P    NM +I
Sbjct:   43 LSAQNDGDYAEALENYDEALKLEDNPTDRGETLKNMAIIYMSNGEEERAIETYRRALDENSNQPSCLKNMGLI 115          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_SYNPW (Photosystem I assembly protein ycf3 OS=Synechococcus sp. (strain WH7803) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = -2
Query:   25 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 243
            +SAQ++G+YAEAL+NY E+++LE +P DR   L N+ +I+ SNGE  +AL  Y +AL+ NP  P    NM +I
Sbjct:   43 LSAQNDGDYAEALENYEESLKLEENPIDRGETLKNMAIIYMSNGEEDRALATYQKALDENPKQPSCLKNMGLI 115          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_PROMM (Photosystem I assembly protein ycf3 OS=Prochlorococcus marinus (strain MIT 9313) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = -2
Query:   25 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 243
            +SAQ+ G+YAEAL+NY E+++LE  P+DRS  L N+ +I+ SNG+   AL+ Y RAL++N   P    NM +I
Sbjct:   43 LSAQNAGDYAEALENYEESLKLEESPFDRSETLKNMAIIYMSNGDEDLALDTYQRALDQNSNQPSCLKNMGLI 115          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_PROM4 (Photosystem I assembly protein ycf3 OS=Prochlorococcus marinus (strain MIT 9211) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 33/72 (45.83%), Postives = 51/72 (70.83%), Query Frame = -2
Query:   25 SAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 240
            +AQ+ G+Y+EAL+NY E+++LE +P DR   L N+ +I+ SNG+  +ALE Y +AL++NP  P    NM +I
Sbjct:   44 AAQNNGDYSEALENYEESLKLEENPVDRGETLKNMAIIYMSNGDEDRALETYVKALDQNPKQPSCLKNMGLI 115          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_PROM3 (Photosystem I assembly protein ycf3 OS=Prochlorococcus marinus (strain MIT 9303) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = -2
Query:   25 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 243
            +SAQ+ G+YAEAL+NY E+++LE  P+DRS  L N+ +I+ SNG+   AL+ Y RAL++N   P    NM +I
Sbjct:   43 LSAQNAGDYAEALENYEESLKLEESPFDRSETLKNMAIIYMSNGDEDLALDTYQRALDQNSNQPSCLKNMGLI 115          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_PROMA (Photosystem I assembly protein ycf3 OS=Prochlorococcus marinus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = -2
Query:   25 SAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 240
            +AQ+ G+Y+EAL+NY E+++LE +  DR   L N+ +I+ SNG+  KAL+ Y +ALE+NP  P    NM +I
Sbjct:   44 AAQNNGDYSEALENYEESLKLEENAIDRGETLKNMAIIYMSNGDEDKALDTYQKALEQNPKQPSCLKNMGLI 115          
The following BLAST results are available for this feature:
BLAST of DN621406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_SYNPX4.988e-1349.32Photosystem I assembly protein ycf3 OS=Synechococc... [more]
YCF3_SYNPW4.988e-1347.95Photosystem I assembly protein ycf3 OS=Synechococc... [more]
YCF3_PROMM1.451e-1247.95Photosystem I assembly protein ycf3 OS=Prochloroco... [more]
YCF3_PROM41.451e-1245.83Photosystem I assembly protein ycf3 OS=Prochloroco... [more]
YCF3_PROM31.451e-1247.95Photosystem I assembly protein ycf3 OS=Prochloroco... [more]
YCF3_PROMA9.406e-1245.83Photosystem I assembly protein ycf3 OS=Prochloroco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621406 ID=DN621406; Name=DN621406; organism=Citrus sinensis; type=EST; length=793bp
TAGAGATAGTCGCACGTAATGACAGATCACAGCCATATTATTAAAAGCTT
GTGGTAAGAACGGATTTCGTTCTAGTGCCCGAAAATAATATTCTAAAGCT
TTTGTATGTTCTCCGTTACTTGTGTGGATAAGGCCTATGTTATAGAGTAT
ATAGCTTCGATCGTAAGGATCAATTTCTAGTCGCATAGCTTCATAATAAT
TCTGTAAAGCTTCCGCATAATTGCCTTCAGATTGAGCTGACATCCGTTAC
GGTCGTCATTCGATTCAAAGAATTCTCCGTTTCAAAACCGTACATGAGAT
GAAAATCTCATACGGCTCCTCCTTTATGTGCATTATGAGAATAATCCATG
AAATCAAAAAAGATTGAAATATTCTCATTATGAACTAAGTGGGGCTAATG
TTTTTACAAGAAATCTCTAGCCAACCTTCCTGCAAAAGCTTTTTTCTTAA
TATCACGCGTGTTGGTACTAGATAAAACCGGAAACTCCAACAATTTCTTT
GTTCTCAACGCCCCTTAATTTACAGGAATTAATCACTTCAACAGTCTTCG
ATGGTTATACGGGTATCCACAGTACGAACGAGATGGATGTTTGTTATCCC
AACCATTCTTCTTAGTCCCGATCCCGCTAAGGAAAGGGGGCAGTTTATAA
CAGAGTTTTCGTGTTGCTGATTCCTAGACGTAGCGCCTCTTCCCCTATGC
CGCCTATTGGTACTGGTGTAGTAAGGTTGACTTGCAATACAGAACCCATA
GGTGTAACCTTTCGCTCAATACTAGAATCGACAATTGAAGCAT
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