DN621406

Overview
NameDN621406
Unique NameDN621406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_EUCGG (Photosystem I assembly protein ycf3 OS=Eucalyptus globulus subsp. globulus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_DRIGR (Photosystem I assembly protein ycf3 OS=Drimys granadensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_DAUCA (Photosystem I assembly protein ycf3 OS=Daucus carota GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_COFAR (Photosystem I assembly protein ycf3 OS=Coffea arabica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_CITSI (Photosystem I assembly protein ycf3 OS=Citrus sinensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_CERDE (Photosystem I assembly protein ycf3 OS=Ceratophyllum demersum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_BRAJU (Photosystem I assembly protein ycf3 OS=Brassica juncea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_ATRBE (Photosystem I assembly protein ycf3 OS=Atropa belladonna GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_ARATH (Photosystem I assembly protein ycf3 OS=Arabidopsis thaliana GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_LOTJA (Photosystem I assembly protein ycf3 OS=Lotus japonicus GN=ycf3 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 6.911e-39
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLE+DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
The following BLAST results are available for this feature:
BLAST of DN621406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_EUCGG5.292e-39100.00Photosystem I assembly protein ycf3 OS=Eucalyptus ... [more]
YCF3_DRIGR5.292e-39100.00Photosystem I assembly protein ycf3 OS=Drimys gran... [more]
YCF3_DAUCA5.292e-39100.00Photosystem I assembly protein ycf3 OS=Daucus caro... [more]
YCF3_COFAR5.292e-39100.00Photosystem I assembly protein ycf3 OS=Coffea arab... [more]
YCF3_CITSI5.292e-39100.00Photosystem I assembly protein ycf3 OS=Citrus sine... [more]
YCF3_CERDE5.292e-39100.00Photosystem I assembly protein ycf3 OS=Ceratophyll... [more]
YCF3_BRAJU5.292e-39100.00Photosystem I assembly protein ycf3 OS=Brassica ju... [more]
YCF3_ATRBE5.292e-39100.00Photosystem I assembly protein ycf3 OS=Atropa bell... [more]
YCF3_ARATH5.292e-39100.00Photosystem I assembly protein ycf3 OS=Arabidopsis... [more]
YCF3_LOTJA6.911e-3998.68Photosystem I assembly protein ycf3 OS=Lotus japon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621406 ID=DN621406; Name=DN621406; organism=Citrus sinensis; type=EST; length=793bp
TAGAGATAGTCGCACGTAATGACAGATCACAGCCATATTATTAAAAGCTT
GTGGTAAGAACGGATTTCGTTCTAGTGCCCGAAAATAATATTCTAAAGCT
TTTGTATGTTCTCCGTTACTTGTGTGGATAAGGCCTATGTTATAGAGTAT
ATAGCTTCGATCGTAAGGATCAATTTCTAGTCGCATAGCTTCATAATAAT
TCTGTAAAGCTTCCGCATAATTGCCTTCAGATTGAGCTGACATCCGTTAC
GGTCGTCATTCGATTCAAAGAATTCTCCGTTTCAAAACCGTACATGAGAT
GAAAATCTCATACGGCTCCTCCTTTATGTGCATTATGAGAATAATCCATG
AAATCAAAAAAGATTGAAATATTCTCATTATGAACTAAGTGGGGCTAATG
TTTTTACAAGAAATCTCTAGCCAACCTTCCTGCAAAAGCTTTTTTCTTAA
TATCACGCGTGTTGGTACTAGATAAAACCGGAAACTCCAACAATTTCTTT
GTTCTCAACGCCCCTTAATTTACAGGAATTAATCACTTCAACAGTCTTCG
ATGGTTATACGGGTATCCACAGTACGAACGAGATGGATGTTTGTTATCCC
AACCATTCTTCTTAGTCCCGATCCCGCTAAGGAAAGGGGGCAGTTTATAA
CAGAGTTTTCGTGTTGCTGATTCCTAGACGTAGCGCCTCTTCCCCTATGC
CGCCTATTGGTACTGGTGTAGTAAGGTTGACTTGCAATACAGAACCCATA
GGTGTAACCTTTCGCTCAATACTAGAATCGACAATTGAAGCAT
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