DN621406

Overview
NameDN621406
Unique NameDN621406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSA (Photosystem I assembly protein ycf3 OS=Oryza sativa GN=ycf3 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.626e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            M AQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MLAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_NANDO (Photosystem I assembly protein ycf3 OS=Nandina domestica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.626e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_MAIZE (Photosystem I assembly protein ycf3 OS=Zea mays GN=ycf3 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.626e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            M AQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MLAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_CUSEX (Photosystem I assembly protein ycf3 OS=Cuscuta exaltata GN=ycf3 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.626e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHMKALEYYFRALERNPFLPQAFNNMAVICHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_IPOPU (Photosystem I assembly protein ycf3 OS=Ipomoea purpurea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA NNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQACNNMAVICHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_CALFG (Photosystem I assembly protein ycf3 OS=Calycanthus floridus var. glaucus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRA+ERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRAIERNPFLPQAFNNMAVICHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_PELHO (Photosystem I assembly protein ycf3 OS=Pelargonium hortorum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.851e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEAMRLE+DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA NNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEMDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQALNNMAVICHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_CHLSC (Photosystem I assembly protein ycf3 OS=Chloranthus spicatus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.851e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQS+GNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSDGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_SORBI (Photosystem I assembly protein ycf3 OS=Sorghum bicolor GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            M AQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   45 MLAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 120          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_SACOF (Photosystem I assembly protein ycf3 OS=Saccharum officinarum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            M AQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MLAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118          
The following BLAST results are available for this feature:
BLAST of DN621406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_ORYSA2.626e-3898.68Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]
YCF3_NANDO2.626e-3898.68Photosystem I assembly protein ycf3 OS=Nandina dom... [more]
YCF3_MAIZE2.626e-3898.68Photosystem I assembly protein ycf3 OS=Zea mays GN... [more]
YCF3_CUSEX2.626e-3898.68Photosystem I assembly protein ycf3 OS=Cuscuta exa... [more]
YCF3_IPOPU4.480e-3898.68Photosystem I assembly protein ycf3 OS=Ipomoea pur... [more]
YCF3_CALFG4.480e-3897.37Photosystem I assembly protein ycf3 OS=Calycanthus... [more]
YCF3_PELHO5.851e-3897.37Photosystem I assembly protein ycf3 OS=Pelargonium... [more]
YCF3_CHLSC5.851e-3897.37Photosystem I assembly protein ycf3 OS=Chloranthus... [more]
YCF3_SORBI1.303e-3797.37Photosystem I assembly protein ycf3 OS=Sorghum bic... [more]
YCF3_SACOF1.303e-3797.37Photosystem I assembly protein ycf3 OS=Saccharum o... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621406 ID=DN621406; Name=DN621406; organism=Citrus sinensis; type=EST; length=793bp
TAGAGATAGTCGCACGTAATGACAGATCACAGCCATATTATTAAAAGCTT
GTGGTAAGAACGGATTTCGTTCTAGTGCCCGAAAATAATATTCTAAAGCT
TTTGTATGTTCTCCGTTACTTGTGTGGATAAGGCCTATGTTATAGAGTAT
ATAGCTTCGATCGTAAGGATCAATTTCTAGTCGCATAGCTTCATAATAAT
TCTGTAAAGCTTCCGCATAATTGCCTTCAGATTGAGCTGACATCCGTTAC
GGTCGTCATTCGATTCAAAGAATTCTCCGTTTCAAAACCGTACATGAGAT
GAAAATCTCATACGGCTCCTCCTTTATGTGCATTATGAGAATAATCCATG
AAATCAAAAAAGATTGAAATATTCTCATTATGAACTAAGTGGGGCTAATG
TTTTTACAAGAAATCTCTAGCCAACCTTCCTGCAAAAGCTTTTTTCTTAA
TATCACGCGTGTTGGTACTAGATAAAACCGGAAACTCCAACAATTTCTTT
GTTCTCAACGCCCCTTAATTTACAGGAATTAATCACTTCAACAGTCTTCG
ATGGTTATACGGGTATCCACAGTACGAACGAGATGGATGTTTGTTATCCC
AACCATTCTTCTTAGTCCCGATCCCGCTAAGGAAAGGGGGCAGTTTATAA
CAGAGTTTTCGTGTTGCTGATTCCTAGACGTAGCGCCTCTTCCCCTATGC
CGCCTATTGGTACTGGTGTAGTAAGGTTGACTTGCAATACAGAACCCATA
GGTGTAACCTTTCGCTCAATACTAGAATCGACAATTGAAGCAT
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