DN621406

Overview
NameDN621406
Unique NameDN621406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_ORYNI (Photosystem I assembly protein ycf3 OS=Oryza nivara GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            M AQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MLAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_LOLPR (Photosystem I assembly protein ycf3 OS=Lolium perenne GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            M AQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MLAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_JASNU (Photosystem I assembly protein ycf3 OS=Jasminum nudiflorum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            +SAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN FLPQAFNNMAVICHY
Sbjct:   43 ISAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNSFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_HORVU (Photosystem I assembly protein ycf3 OS=Hordeum vulgare GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            M AQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MLAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_AGRST (Photosystem I assembly protein ycf3 OS=Agrostis stolonifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            M AQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MLAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_PHAAO (Photosystem I assembly protein ycf3 OS=Phalaenopsis aphrodite subsp. formosana GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_LIRTU (Photosystem I assembly protein ycf3 OS=Liriodendron tulipifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_LEMMI (Photosystem I assembly protein ycf3 OS=Lemna minor GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_ILLOL (Photosystem I assembly protein ycf3 OS=Illicium oligandrum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
[Close]
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_ACOCL (Photosystem I assembly protein ycf3 OS=Acorus calamus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = -2 
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 118
The following BLAST results are available for this feature:
BLAST of DN621406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_ORYNI1.303e-3797.37Photosystem I assembly protein ycf3 OS=Oryza nivar... [more]
YCF3_LOLPR1.303e-3797.37Photosystem I assembly protein ycf3 OS=Lolium pere... [more]
YCF3_JASNU1.303e-3797.37Photosystem I assembly protein ycf3 OS=Jasminum nu... [more]
YCF3_HORVU1.303e-3797.37Photosystem I assembly protein ycf3 OS=Hordeum vul... [more]
YCF3_AGRST1.303e-3797.37Photosystem I assembly protein ycf3 OS=Agrostis st... [more]
YCF3_PHAAO1.702e-3797.37Photosystem I assembly protein ycf3 OS=Phalaenopsi... [more]
YCF3_LIRTU1.702e-3797.37Photosystem I assembly protein ycf3 OS=Liriodendro... [more]
YCF3_LEMMI1.702e-3797.37Photosystem I assembly protein ycf3 OS=Lemna minor... [more]
YCF3_ILLOL1.702e-3797.37Photosystem I assembly protein ycf3 OS=Illicium ol... [more]
YCF3_ACOCL1.702e-3797.37Photosystem I assembly protein ycf3 OS=Acorus cala... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621406 ID=DN621406; Name=DN621406; organism=Citrus sinensis; type=EST; length=793bp
TAGAGATAGTCGCACGTAATGACAGATCACAGCCATATTATTAAAAGCTT
GTGGTAAGAACGGATTTCGTTCTAGTGCCCGAAAATAATATTCTAAAGCT
TTTGTATGTTCTCCGTTACTTGTGTGGATAAGGCCTATGTTATAGAGTAT
ATAGCTTCGATCGTAAGGATCAATTTCTAGTCGCATAGCTTCATAATAAT
TCTGTAAAGCTTCCGCATAATTGCCTTCAGATTGAGCTGACATCCGTTAC
GGTCGTCATTCGATTCAAAGAATTCTCCGTTTCAAAACCGTACATGAGAT
GAAAATCTCATACGGCTCCTCCTTTATGTGCATTATGAGAATAATCCATG
AAATCAAAAAAGATTGAAATATTCTCATTATGAACTAAGTGGGGCTAATG
TTTTTACAAGAAATCTCTAGCCAACCTTCCTGCAAAAGCTTTTTTCTTAA
TATCACGCGTGTTGGTACTAGATAAAACCGGAAACTCCAACAATTTCTTT
GTTCTCAACGCCCCTTAATTTACAGGAATTAATCACTTCAACAGTCTTCG
ATGGTTATACGGGTATCCACAGTACGAACGAGATGGATGTTTGTTATCCC
AACCATTCTTCTTAGTCCCGATCCCGCTAAGGAAAGGGGGCAGTTTATAA
CAGAGTTTTCGTGTTGCTGATTCCTAGACGTAGCGCCTCTTCCCCTATGC
CGCCTATTGGTACTGGTGTAGTAAGGTTGACTTGCAATACAGAACCCATA
GGTGTAACCTTTCGCTCAATACTAGAATCGACAATTGAAGCAT
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