DN621406

Overview
NameDN621406
Unique NameDN621406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_PINKO (Photosystem I assembly protein ycf3 OS=Pinus koraiensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.762e-34
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEG YAEALQNYYEAMRLE DPYDRSYILYNIGL+HTSNGEHTKALEYYF+ALERNP LPQA NN A+ICHY
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNNTALICHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_CYCTA (Photosystem I assembly protein ycf3 OS=Cycas taitungensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.762e-34
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEG YAEALQNYYEAMR EIDPYDRSYILYNIGLIH SNGEHT+ALEYYF+AL+RNP LPQAFNNMAVICHY
Sbjct:   44 MSAQSEGEYAEALQNYYEAMRPEIDPYDRSYILYNIGLIHMSNGEHTEALEYYFQALKRNPSLPQAFNNMAVICHY 119          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_ADICA (Photosystem I assembly protein ycf3 OS=Adiantum capillus-veneris GN=ycf3 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.667e-33
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEG YAEAL +YY+AMRLEID YDRSYILYNIGLIHTSNG H KALEYYF+ALERN FLPQAFNNMAVICHY
Sbjct:   43 MSAQSEGEYAEALGSYYKAMRLEIDSYDRSYILYNIGLIHTSNGNHAKALEYYFQALERNSFLPQAFNNMAVICHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_NEPOL (Photosystem I assembly protein ycf3 OS=Nephroselmis olivacea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQ+EG YAEALQNYYEAMRLE+D YDRSYILYNIGLIHTSNGEH KALEYY++ALERNP+LPQA NN+AVI HY
Sbjct:   43 MSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIHTSNGEHAKALEYYYQALERNPYLPQALNNIAVIYHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_MESVI (Photosystem I assembly protein ycf3 OS=Mesostigma viride GN=ycf3 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQ+EG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYY++A+ERNP LPQA NN+AVI HY
Sbjct:   43 MSAQAEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHGKALEYYYQAIERNPSLPQALNNIAVIYHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_CHLAT (Photosystem I assembly protein ycf3 OS=Chlorokybus atmophyticus GN=ycf3 PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.266e-32
Identity = 64/76 (84.21%), Postives = 70/76 (92.11%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQ+EG YAEALQNYYEAMRLE+D YDRSYILYNIGLIHTSNGEH KALEYY++A+ERNP LPQA NN+AVI HY
Sbjct:   43 MSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIHTSNGEHAKALEYYYQAIERNPSLPQALNNIAVIYHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_LEPTE (Photosystem I assembly protein ycf3 OS=Leptosira terrestris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.069e-31
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEG YAEALQNYYEAMRLE+D YDRSYI YNIGLIHTSNGEH +ALEYY++ALERNP LPQA NN+AVI HY
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEVDAYDRSYIFYNIGLIHTSNGEHARALEYYYQALERNPSLPQALNNIAVIYHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_STIHE (Photosystem I assembly protein ycf3 OS=Stigeoclonium helveticum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.396e-31
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQSEG YAEALQNYYEAMRLE+D YDRSYILYNIGLIHTSNGEH +ALEYY++ALERNP LP A NN+AVI HY
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIHTSNGEHARALEYYYQALERNPSLPSALNNIAVIYHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_SCEOB (Photosystem I assembly protein ycf3 OS=Scenedesmus obliquus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.304e-31
Identity = 63/76 (82.89%), Postives = 69/76 (90.79%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQ+EG YAEALQNYYEAMRLE+D YDRSYILYNIGLIHTSNGEH +ALEYY++ALERNP LP A NN+AVI HY
Sbjct:   43 MSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIHTSNGEHGRALEYYYQALERNPSLPSALNNIAVIYHY 118          
BLAST of DN621406 vs. ExPASy Swiss-Prot
Match: YCF3_OSTTA (Photosystem I assembly protein ycf3 OS=Ostreococcus tauri GN=ycf3 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.304e-31
Identity = 62/76 (81.58%), Postives = 70/76 (92.11%), Query Frame = -2
Query:   16 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 243
            MSAQ+EG YAEALQNY +AMRLE+DPYDRS+I YNIGLIHTSNGEHTKALEYY++AL+RNP LPQA NN+AVI HY
Sbjct:   43 MSAQAEGEYAEALQNYAQAMRLEVDPYDRSFIFYNIGLIHTSNGEHTKALEYYYQALDRNPSLPQALNNIAVIYHY 118          
The following BLAST results are available for this feature:
BLAST of DN621406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_PINKO1.762e-3489.47Photosystem I assembly protein ycf3 OS=Pinus korai... [more]
YCF3_CYCTA1.762e-3490.79Photosystem I assembly protein ycf3 OS=Cycas taitu... [more]
YCF3_ADICA5.667e-3388.16Photosystem I assembly protein ycf3 OS=Adiantum ca... [more]
YCF3_NEPOL9.666e-3385.53Photosystem I assembly protein ycf3 OS=Nephroselmi... [more]
YCF3_MESVI9.666e-3386.84Photosystem I assembly protein ycf3 OS=Mesostigma ... [more]
YCF3_CHLAT6.266e-3284.21Photosystem I assembly protein ycf3 OS=Chlorokybus... [more]
YCF3_LEPTE1.069e-3184.21Photosystem I assembly protein ycf3 OS=Leptosira t... [more]
YCF3_STIHE1.396e-3184.21Photosystem I assembly protein ycf3 OS=Stigeocloni... [more]
YCF3_SCEOB5.304e-3182.89Photosystem I assembly protein ycf3 OS=Scenedesmus... [more]
YCF3_OSTTA5.304e-3181.58Photosystem I assembly protein ycf3 OS=Ostreococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621406 ID=DN621406; Name=DN621406; organism=Citrus sinensis; type=EST; length=793bp
TAGAGATAGTCGCACGTAATGACAGATCACAGCCATATTATTAAAAGCTT
GTGGTAAGAACGGATTTCGTTCTAGTGCCCGAAAATAATATTCTAAAGCT
TTTGTATGTTCTCCGTTACTTGTGTGGATAAGGCCTATGTTATAGAGTAT
ATAGCTTCGATCGTAAGGATCAATTTCTAGTCGCATAGCTTCATAATAAT
TCTGTAAAGCTTCCGCATAATTGCCTTCAGATTGAGCTGACATCCGTTAC
GGTCGTCATTCGATTCAAAGAATTCTCCGTTTCAAAACCGTACATGAGAT
GAAAATCTCATACGGCTCCTCCTTTATGTGCATTATGAGAATAATCCATG
AAATCAAAAAAGATTGAAATATTCTCATTATGAACTAAGTGGGGCTAATG
TTTTTACAAGAAATCTCTAGCCAACCTTCCTGCAAAAGCTTTTTTCTTAA
TATCACGCGTGTTGGTACTAGATAAAACCGGAAACTCCAACAATTTCTTT
GTTCTCAACGCCCCTTAATTTACAGGAATTAATCACTTCAACAGTCTTCG
ATGGTTATACGGGTATCCACAGTACGAACGAGATGGATGTTTGTTATCCC
AACCATTCTTCTTAGTCCCGATCCCGCTAAGGAAAGGGGGCAGTTTATAA
CAGAGTTTTCGTGTTGCTGATTCCTAGACGTAGCGCCTCTTCCCCTATGC
CGCCTATTGGTACTGGTGTAGTAAGGTTGACTTGCAATACAGAACCCATA
GGTGTAACCTTTCGCTCAATACTAGAATCGACAATTGAAGCAT
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