DN621404

Overview
NameDN621404
Unique NameDN621404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.049e-28
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 3
Query:  483 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKL 776
            EKKRRL+ +QV+ LE++FE ENKLEPERK +LA+ LG+ PRQVAVWFQNRRARWKTKQLE D+  LKA YDAL  ++ +L  DN+ L  ++  L  KL
Sbjct:   85 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKL 182          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSJ (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. japonica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.802e-26
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 3
Query:  483 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELK 767
            EKKRRLSV+QV+ LE++FE  NKLEPERK +LA+ LGLQPRQVA+WFQNRRARWKTKQLE+D+  L+   DA +   D+L   N  L  EI  LK
Sbjct:  103 EKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIVALK 197          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSI (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.802e-26
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 3
Query:  483 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELK 767
            EKKRRLSV+QV+ LE++FE  NKLEPERK +LA+ LGLQPRQVA+WFQNRRARWKTKQLE+D+  L+   DA +   D+L   N  L  EI  LK
Sbjct:  103 EKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIVALK 197          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.802e-26
Identity = 54/98 (55.10%), Postives = 75/98 (76.53%), Query Frame = 3
Query:  474 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELK 767
            H    +RR S +Q+K+LE  FE E +LEP +KV+LA+ELGLQPRQVA+WFQN+RARWK+KQLE +Y +L+ NYD L   ++SL  + +AL+ E++ LK
Sbjct:   28 HNKNNQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQRLK 125          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSJ (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica GN=HOX6 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25
Identity = 52/99 (52.53%), Postives = 77/99 (77.78%), Query Frame = 3
Query:  480 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKL 776
            +++K+R S +Q+K+LE  F  + KLEP +K++LA+ELGLQPRQVA+WFQN+RARWK+KQLER+Y  L+ +YDAL  +Y+SL  +  AL+ ++ +L   L
Sbjct:   28 ADRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEML 126          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSI (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica GN=HOX6 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.464e-25
Identity = 52/99 (52.53%), Postives = 77/99 (77.78%), Query Frame = 3
Query:  480 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKL 776
            +++K+R S +Q+K+LE  F  + KLEP +K++LA+ELGLQPRQVA+WFQN+RARWK+KQLER+Y  L+ +YDAL  +Y+SL  +  AL+ ++ +L   L
Sbjct:   28 ADRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEML 126          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.218e-25
Identity = 55/99 (55.56%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  477 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSK 773
            + EKKRRL+++Q+KALEK+FE+ NKLE +RK++LA+ LGLQPRQ+A+WFQNRRAR KTKQLE+DY +LK  +++L+   + L   N+ L  ++  LKS+
Sbjct:   68 MGEKKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQAQVMALKSR 166          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSJ (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica GN=HOX24 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.086e-24
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:  483 EKKRRLSVDQVKALEKNFEVEN-KLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKLN 779
            E+KRR + +QV++LE  F     KLEP  K +LA+ELGLQPRQVA+WFQN+RARW++KQ+E DY  L+A YDAL    +SL  +  AL  ++ EL+ KLN
Sbjct:   63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLN 162          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSI (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica GN=HOX24 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.086e-24
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:  483 EKKRRLSVDQVKALEKNFEVEN-KLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKLN 779
            E+KRR + +QV++LE  F     KLEP  K +LA+ELGLQPRQVA+WFQN+RARW++KQ+E DY  L+A YDAL    +SL  +  AL  ++ EL+ KLN
Sbjct:   64 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALAAQVDELRGKLN 163          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: ATB12_ARATH (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana GN=ATHB-12 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.558e-24
Identity = 49/99 (49.49%), Postives = 76/99 (76.77%), Query Frame = 3
Query:  480 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKSKL 776
            S  ++R S +Q+K+LE  FE E +LEP +KV++A+ELGLQPRQVA+WFQN+RARWKTKQLE++Y  L+ANY+ L   ++ +  + ++L+ E++ L  ++
Sbjct:   28 SNNQKRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEM 126          
The following BLAST results are available for this feature:
BLAST of DN621404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
HOX5_ORYSI9.049e-2862.24Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX23_ORYSJ3.802e-2663.16Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HOX23_ORYSI3.802e-2663.16Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
ATHB7_ARATH3.802e-2655.10Homeobox-leucine zipper protein ATHB-7 OS=Arabidop... [more]
HOX6_ORYSJ2.464e-2552.53Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]
HOX6_ORYSI2.464e-2552.53Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]
ATB23_ARATH3.218e-2555.56Homeobox-leucine zipper protein ATHB-23 OS=Arabido... [more]
HOX24_ORYSJ2.086e-2454.00Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
HOX24_ORYSI2.086e-2454.00Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
ATB12_ARATH3.558e-2449.49Homeobox-leucine zipper protein ATHB-12 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621404 ID=DN621404; Name=DN621404; organism=Citrus sinensis; type=EST; length=779bp
TTTTTTTCCTGTTTTCGTTTAAATTCATTTTTATGGGTTCAGAGGGGCAA
CAAGTGTTAAATAGGGAGAAGAAATACGTTGAACTAAAGAGAGAAGAGGA
GTTGTTGTACAATTGTAGTATTATTATACAGAACAGCGCTCTATTTTCAG
ACACGGCAGCTGCTCTTTCAAGTCCTAAAGAAGAAACTCCTCTTAAAGCT
ACTTCTTAAAACTTGAGAGATCCACTTAAAAAAATAAAAAATCAAAAAAA
TTTCCGATCTAAGAAAATAGATCTGCTTACTACAGTCGGCTTCACTTCAT
CATCAGGCATGAAGCGATCACTTTGCAGCTCAGATGATTCCTTGGGTGCT
TTGATGTCCATCTGCCCAGCCACAGACGAGCAGAGTCCGAGAAACAACCA
AGTTTACAGTCGAGAATTCCAGACGATGTTGGACGGTCTGGATGAAGAGG
GGTGTTTAGAAGAATCCGGAGGGCACGTCTCGGAGAAAAAGAGGAGACTG
AGCGTGGATCAGGTGAAGGCCTTGGAGAAGAACTTCGAGGTGGAAAACAA
GCTTGAGCCCGAGAGAAAAGTGAAGTTGGCACAAGAACTTGGGCTGCAGC
CAAGACAAGTTGCTGTTTGGTTCCAAAACCGACGCGCTCGTTGGAAAACC
AAGCAACTTGAAAGAGATTACGGCGTTCTTAAGGCAAATTATGATGCTCT
CAAGCTCAATTATGACTCCCTCTCACACGACAATGAAGCCTTGCTTTAAG
AGATAAGAGAGCTGAAATCAAAGCTGAAT
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