DN621404

Overview
NameDN621404
Unique NameDN621404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  480 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKS 770
            + KK RLS DQ   LE+ F+  + L P++KV LA+ L L+PRQV VWFQNRRAR K KQ E D        + LK   D L+ DN  L  E+ EL++
Sbjct:   92 ARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVD-------CEHLKRWCDQLADDNRRLHKELAELRA 181          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  480 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKS 770
            + KK RLS DQ   LE+ F+  + L P++KV LA+ L L+PRQV VWFQNRRAR K KQ E D        + LK   D L+ DN  L  E+ EL++
Sbjct:   92 ARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVD-------CEHLKRWCDQLADDNRRLHKELAELRA 181          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  480 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKS 770
            S KK RLS DQ   LE+ F+  + L P++K+ LA++L L+ RQV VWFQNRRAR K KQ E D        + LK   D+L+ +N  L  E+ EL++
Sbjct:  161 SRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVD-------CEYLKRCCDNLTEENRRLQKEVSELRA 250          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  486 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKS 770
            KK RLS DQ   LE+ F+  + L P++KV LA  LGL+PRQV VWFQNRRAR K KQ E D        + LK   + L+ +N+ L  E+ +L++
Sbjct:  115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVD-------CEYLKRWCERLADENKRLEKELADLRA 202          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  486 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKS 770
            KK RLS DQ   LE+ F+  + L P++KV LA  LGL+PRQV VWFQNRRAR K KQ E D        + LK   + L+ +N+ L  E+ +L++
Sbjct:  115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVD-------CEYLKRWCERLADENKRLEKELADLRA 202          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.295e-13
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  480 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKS 770
            S KK RLS +Q   LE  F+  + L P++KV LA++L L+PRQV VWFQNRRAR K KQ E D        + LK   ++L+ +N  L  E+++L++
Sbjct:   92 SRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVD-------CELLKRCCETLTEENRRLHRELQQLRA 181          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.295e-13
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  480 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKS 770
            S KK RLS +Q   LE  F+  + L P++KV LA++L L+PRQV VWFQNRRAR K KQ E D        + LK   ++L+ +N  L  E+++L++
Sbjct:   92 SRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVD-------CELLKRCCETLTEENRRLHRELQQLRA 181          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  480 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKS 770
            + KK RLS +Q   LE++F+  + L P++KV LA++L L+PRQV VWFQNRRAR K KQ E D        + LK   ++L+ +N  L  E+ EL++
Sbjct:  172 ARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVD-------CEYLKRCCETLTEENRRLHKELAELRA 261          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.222e-13
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  480 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKS 770
            + KK RLS +Q   LE++F+  + L P++KV LA++L L+PRQV VWFQNRRAR K KQ E D        + LK   ++L+ +N  L  E+ EL++
Sbjct:  172 ARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVD-------CEYLKRCCETLTEENRRLHKELAELRA 261          
BLAST of DN621404 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  480 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSLSHDNEALL*EIRELKS 770
            + KK RLS +Q   LE++F+  + L P++K+ LA++L L+PRQV VWFQNRRAR K KQ E D        + LK   ++L+ +N  L  E+ EL++
Sbjct:  175 ARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVD-------CEYLKRCCETLTEENRRLQKELAELRA 264          
The following BLAST results are available for this feature:
BLAST of DN621404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
HOX28_ORYSJ9.712e-1447.42Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX28_ORYSI9.712e-1447.42Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
ATHB4_ARATH2.826e-1345.36Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HOX2_ORYSJ4.820e-1346.32Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI4.820e-1346.32Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX15_ORYSJ6.295e-1344.33Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX15_ORYSI6.295e-1344.33Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX27_ORYSJ8.222e-1344.33Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI8.222e-1344.33Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX11_ORYSJ1.402e-1243.30Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621404 ID=DN621404; Name=DN621404; organism=Citrus sinensis; type=EST; length=779bp
TTTTTTTCCTGTTTTCGTTTAAATTCATTTTTATGGGTTCAGAGGGGCAA
CAAGTGTTAAATAGGGAGAAGAAATACGTTGAACTAAAGAGAGAAGAGGA
GTTGTTGTACAATTGTAGTATTATTATACAGAACAGCGCTCTATTTTCAG
ACACGGCAGCTGCTCTTTCAAGTCCTAAAGAAGAAACTCCTCTTAAAGCT
ACTTCTTAAAACTTGAGAGATCCACTTAAAAAAATAAAAAATCAAAAAAA
TTTCCGATCTAAGAAAATAGATCTGCTTACTACAGTCGGCTTCACTTCAT
CATCAGGCATGAAGCGATCACTTTGCAGCTCAGATGATTCCTTGGGTGCT
TTGATGTCCATCTGCCCAGCCACAGACGAGCAGAGTCCGAGAAACAACCA
AGTTTACAGTCGAGAATTCCAGACGATGTTGGACGGTCTGGATGAAGAGG
GGTGTTTAGAAGAATCCGGAGGGCACGTCTCGGAGAAAAAGAGGAGACTG
AGCGTGGATCAGGTGAAGGCCTTGGAGAAGAACTTCGAGGTGGAAAACAA
GCTTGAGCCCGAGAGAAAAGTGAAGTTGGCACAAGAACTTGGGCTGCAGC
CAAGACAAGTTGCTGTTTGGTTCCAAAACCGACGCGCTCGTTGGAAAACC
AAGCAACTTGAAAGAGATTACGGCGTTCTTAAGGCAAATTATGATGCTCT
CAAGCTCAATTATGACTCCCTCTCACACGACAATGAAGCCTTGCTTTAAG
AGATAAGAGAGCTGAAATCAAAGCTGAAT
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