DN621401

Overview
NameDN621401
Unique NameDN621401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.404e-60
Identity = 103/140 (73.57%), Postives = 121/140 (86.43%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATN CPPN AL+ D GGWCNPP  HFDMAEPAF +IAQ RAG+VP+ +RR+ CAK+GGIRFT+ GHSYFNLVLVTNVGGAGDV +VS+KGS++GWQAMS NWG NWQ+ + L+GQ LSF+VTASDGRTVTS+NV P+ W
Sbjct:   98 TATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGW 237          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.086e-60
Identity = 103/146 (70.55%), Postives = 126/146 (86.30%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTG------WQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN AL +D GGWCNPP +HFD+AEPAFL+IA++ AGIVP+SFRR+ CA+KGG+RFTVNGH+YFNLVLVTNVGGAGDV S+++KGS +G      WQ MSRNWGQNWQSN+YL+G++LSF+VTA DGR++T  +V PA W
Sbjct:  103 TATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGW 248          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.336e-60
Identity = 101/140 (72.14%), Postives = 119/140 (85.00%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPNLA  +DNGGWCNPP  HFD+A P FL+IA+YRAGIVPIS+RR+ C K GGIRFT+NGH YFNLVL+TNV GAGD+   S+KGSKTGW +++RNWGQNWQSN+ L GQSLSF+VT+SD RT TS N+ P+NW
Sbjct:  108 TATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNW 247          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.899e-59
Identity = 101/140 (72.14%), Postives = 117/140 (83.57%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN   ++DNGGWCNPP +HFD+A P FL IA+Y+AGIVP+S+RRIPC KKGGIRFT+NG  YFNLVLVTNV GAGDV  VS+KGS T W  +SRNWGQNWQSN+ L GQSLSF+V  SDGR+ TSNN+ P+NW
Sbjct:  106 TATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNW 245          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.314e-58
Identity = 100/140 (71.43%), Postives = 114/140 (81.43%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN AL +DNGGWCNPP  HFD+A P FL IA+YRAGIVP+S+RR+PC KKGG+RFT+NG  YFNLVL+TNV GAGD+   S+KG+ TGW  MSRNWGQNWQSNS L GQ+LSF+VT SD RT TS N  PA W
Sbjct:  112 TATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGW 251          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.716e-58
Identity = 99/140 (70.71%), Postives = 118/140 (84.29%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATN CPPN AL ND GGWCNPP QHFDMAEPA+L+I  Y  GIVP+ ++R+PCAK+GG+RFT+NG  YF LVLV+NVGG G + SVSIKGS+TGW AMSRNWG NWQSN+YL+GQSLSF+VT+SDG+T+T  +V PA W
Sbjct:  109 TATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGW 248          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.523e-58
Identity = 98/141 (69.50%), Postives = 120/141 (85.11%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN AL +D+GGWCNPP  HFDM++P F +IA ++AGIVP+S+RR+ C KKGGIRFT+NGHSYFNLVLVTNVGGAGDVH+V++K  ++  WQA+SRNWGQNWQS + L+GQ+LSF+VT  DGR+V SNN VP  W
Sbjct:  139 TATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGW 279          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 8.519e-58
Identity = 99/140 (70.71%), Postives = 116/140 (82.86%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN A  +DNGGWCNPP  HFD+A P FL+IA+YRAGIVP+SFRR+PC K+GGIRFT+NG  YFNLVLVTNV GAG++  + +KG+ T W  MSRNWGQNWQSNS L GQSLSF+VT+SD R+ TS N+ PANW
Sbjct:  105 TATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANW 244          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.519e-58
Identity = 102/140 (72.86%), Postives = 116/140 (82.86%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN A  +D+GGWCNPP +HFD+A P FL+I  YRAGIVP+S+RR+PC K GGIRFTVNG  YFNLVLVTNV GAGD++ VS+KGSKT W  MSRNWGQNWQSN+ L GQSLSF+VTASD R+ TS NV PA W
Sbjct:  110 TATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATW 249          
BLAST of DN621401 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.579e-56
Identity = 98/140 (70.00%), Postives = 115/140 (82.14%), Query Frame = -2
Query:  255 TATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 674
            TATNFCPPN ALS D GGWCNPP +HFDM++PA+  IA YRAGIVP+++RR+PC + GGIRF VNGHSYF LVLVTNVGG+G V  + IKGS TGW AMSRNWG NWQSN+ L+GQ+LSF+V A DGR VT+ +V PA W
Sbjct:   99 TATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGW 238          
The following BLAST results are available for this feature:
BLAST of DN621401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP11_ORYSJ1.404e-6073.57Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA6_ORYSJ4.086e-6070.55Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP16_ARATH5.336e-6072.14Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA9_ARATH5.899e-5972.14Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA7_ORYSJ1.314e-5871.43Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ORYSJ1.716e-5870.71Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ORYSJ6.523e-5869.50Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ARATH8.519e-5870.71Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA3_ARATH8.519e-5872.86Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA8_ORYSJ3.579e-5670.00Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06K14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621401 ID=DN621401; Name=DN621401; organism=Citrus sinensis; type=EST; length=675bp
CGTTCATTCAATTGGAGTAATAACTATATATAGAACACAATCATTTCTAT
TTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGCAACAAGACAGGC
CACATCGGCCAGGCCTCAGCCTCACCTACCCCTATTCTCACCCTTTCTCC
CTCACAAACACAATGCCAAATTCAATTAAATATACAATTTCTGATTCACT
TTTTTAAAATCTTAAAATCTAAAACTGACCACCCTCAAAGGTTTGCCCAA
ATTGCCAATTTGCAGGCACAACATTGTTGCTAGTCACAGTCCTGCCGTCA
CTGGCTGTCACTTGGAAAGAAAGACTTTGGCCGTTAAGATAAGAATTGCT
CTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCATCCAGTCTTTG
AACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCCGACATTTGTG
ACCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAAACCTTATTCC
TCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAATTGGGACGATGCCGG
CGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCAGCCATGTCAAAGTGC
TGGAGGGGAGGATTGCACCAACCGCCGTTGTCGTTAGACAGGGCAAGGTT
AGGTGGGCAGAAGTTGGTGGCGGTG
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